Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00542 ATGTTGACGATGATAATCGTTGCGCTCATCACGATCATACTTTTTGGATTCTGCATTGCTCCAGTCAACGGCAGGCGGCGGAGGAACAGAGCCGTCGGATTCTTCCATCCGTACACTAACGACGGCGGTGGCGGGGAGAGGGTGCTCTGGTGCGCCGTCAGAGGCATCCAAGAGGAGATCCCTGACCTTGACTGCTGTATCTACACCGGAGATCATGATGCCACTCCTCAGTCGCTGATGGCTCGAGCCCTAGATCGCTTTGGGGTCACGCTCCTCTCTCCTCCAAAGGTGGTTCATTTGTACAAGAGAAAGTGGATCGAAGAAACCACTTATCCGCACTTTACAATGATTGGTCAAAGTCTGGGTTCTATGTATCTTGCTTGGGAGGCTTTGTGCAAGTTTACTCCTTTATATTACTTCGACACAAGTGGATATGCTTTTACATATCCACTTGCCCGGTTGTTTGGATGTAAAGTTATTTGCTATACACATTATCCCACTATCAGTTCAGACATGCTATCTCGTGTTCGTGATCGCAGCCTGATGTATAATAATGATGCCTTAATTACCAAAAGTGTTTGGCTTTCAAGATGCAAAATAGTCTATTATACATTCTTCAGCTGCTTGTACGGGATTGTAGGATCATGTGCACACCTGGCTATGGTCAATTCATCTTGGACCAAATCCCATATTGAACGTCTTTGGAAAATTCCAGATCGTATTAAGCGAGTATATCCTCCTTGTGATACTTCAGGACTCCAGGTACTTCCCTTGGAACGATCAACAAAAATTCCAGTAATAATATCTGTTGCACAATTTCGACCGGAGAAGGCACACACTCTCCAACTTGAGGCTTTTTCAGCTGCCATTAAGAGATTAGATCCTACCTTACCAAAACCTAAGTTCCAAATTGTAGGTAGCTGTAGAAATAAGTCAGATGATGACAGACTTCAAATGTTAAAAAAGAAAGCAATTGAGCTGAATATTAGTGAACAAGTGGAATTTCACAAGAATGTGACATACAGAGATTTGGTTGGACTTTTAGGGGGTGCTGTTGCTGGGATTCATTCGATGACAGATGAGCATTTTGGCATTAGTGTTGTAGAATACATGGCTGCCGGTGCTATCCCAATTGCTCATAATTCTGCTGGCCCAAAAATGGACATTGTGCTAGATGAAGATGGACAGCAAACAGGATTTCTTGCCTGCACTGTTGAAGAATATGCAGACGCCATTGTGAGGACAGTAACAATGTCGGAGACAGAGAGACTTAAGGTGGCTGCAGCTGCAAGGAGAAGGGCAAGGAGATTTTCTGAGCAGAGGTTTTATGATGACTTCAAAGCTGCAGTGCGTCCTATCCTGTGTCATGTTTCTAGGTGA 1380 0.4428 MLTMIIVALITIILFGFCIAPVNGRRRRNRAVGFFHPYTNDGGGGERVLWCAVRGIQEEIPDLDCCIYTGDHDATPQSLMARALDRFGVTLLSPPKVVHLYKRKWIEETTYPHFTMIGQSLGSMYLAWEALCKFTPLYYFDTSGYAFTYPLARLFGCKVICYTHYPTISSDMLSRVRDRSLMYNNDALITKSVWLSRCKIVYYTFFSCLYGIVGSCAHLAMVNSSWTKSHIERLWKIPDRIKRVYPPCDTSGLQVLPLERSTKIPVIISVAQFRPEKAHTLQLEAFSAAIKRLDPTLPKPKFQIVGSCRNKSDDDRLQMLKKKAIELNISEQVEFHKNVTYRDLVGLLGGAVAGIHSMTDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLDEDGQQTGFLACTVEEYADAIVRTVTMSETERLKVAAAARRRARRFSEQRFYDDFKAAVRPILCHVSR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00542 459 Pfam ALG11 mannosyltransferase N-terminus 30 235 IPR031814 -
Vian9g00542 459 FunFam GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase 256 437 - -
Vian9g00542 459 Pfam Glycosyl transferases group 1 262 421 IPR001296 GO:0016757
Vian9g00542 459 Gene3D Glycogen Phosphorylase B; 253 437 - -
Vian9g00542 459 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 33 450 - -
Vian9g00542 459 CDD GT4_ALG11-like 30 445 IPR038013 GO:0004377
Vian9g00542 459 PANTHER GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE 25 455 IPR038013 GO:0004377
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00542 Vian-Chr9 6155332 6159962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00542 217 442 Glycosyltransferase AT1G78800 26.609 1.44e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00542 K03844 - gmx:100808662 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00542 9 6155332 6159962 Vian9g00542 9 6155332 6159962 ECH