Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00539 ATGTTAGAAAGATTTAGGTACCCTTGGATAGGTACTCGGTCATTAACTGGGTTCAATCTCTTTAGAGTCTTAGCCGTTCATGACTGTTCAGTCTTAGTGAGAAACCGTTCAATCTTCAACTTTCATCAAGGTGTTCGTGTGCTTGTCGTGGTTCCTCTCCAGTTGATTCGGCGTGGAAATGATGGGAATAGTAAAAGGTTTGAGCAGGAGGAGAGCATTAGGGAACGCTCAGGAGTAAGGACATGTGCTATCCCGGTTCGTTCCAATGATCTGCCATTCGATTTCCGGTTCAGCTACACGGAGAGCAGCCCAAAGGTGCGACCCATCGGGCTCAGGGAGCCCAAGTATTCTCCCTTTGGGCCGGGCCGGCTCGACCGGAAGTGGACCGGTGTGTGTGCGCCAGCCGTGGACCCCACTGTTGAGAGCTTAGAGGGTGCGGAGGACCCCAAGTTGGAGGAACAGAGAAAGAAGAAGAGAGAGATGATTCAAGGGAAGCCCCTTACCACTGATGAGAGAAAGGCATTGGTTTCGCAATTTGAGAGAAGCAAAACTAATAGGCATGTCAATCTCGGAAGGGATGGTTTAACTCACAACATGCTGAATGTTATTCATAATCATTGGAAATTTGCTGAAGCAGTTAGAATCAAATGCATGGGTGTTCCAACTATGGACATGAAAAATATTTGTACCCAGCTTGAGGATAAAACGTTTGGGAAGGTCGTCTTCAGACATGGAGGTACACTTATATTATACAGAGGCAGGAATTATAGTCCGAAAAAGAGATCTGTTGTTCCTCTCATGTTGTGGAAGCCCCATGAACCTGTATATCCCAGACTGATTAAGACAACAATTGATGGCTTAAGTATTGAGGAAACGAAAAAAATACGGAAGAGGGGACTAGCTGTTCCTGCTTTAACTAAGCTTGCCAAAAATGGTTATTATGCTTTTTTGGTACCCATGGTCAGAGATGCTTTCCTCTCCTGTGAATTGGTTCGGATAGATTGTGAGGGGCTTGAAAGGAAAGATTACAAGAAAATAGGCTGCAAACTCAGGGACATGGTCCCCTGTATTCTGGTGACTTTTGAGAATGAACAAGTTGTGGTTTGGAGGGGGAAGGATTACAAGCCTCCCAAGGATGGATACTTTCTTAAAGATAGAGAATCGTTTGAAGACAACAATGATGACTTAAATGTGGCACAGGAGCAACAGGCTATTTAG 1218 0.4507 MLERFRYPWIGTRSLTGFNLFRVLAVHDCSVLVRNRSIFNFHQGVRVLVVVPLQLIRRGNDGNSKRFEQEESIRERSGVRTCAIPVRSNDLPFDFRFSYTESSPKVRPIGLREPKYSPFGPGRLDRKWTGVCAPAVDPTVESLEGAEDPKLEEQRKKKREMIQGKPLTTDERKALVSQFERSKTNRHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMKNICTQLEDKTFGKVVFRHGGTLILYRGRNYSPKKRSVVPLMLWKPHEPVYPRLIKTTIDGLSIEETKKIRKRGLAVPALTKLAKNGYYAFLVPMVRDAFLSCELVRIDCEGLERKDYKKIGCKLRDMVPCILVTFENEQVVVWRGKDYKPPKDGYFLKDRESFEDNNDDLNVAQEQQAI 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00539 405 Pfam CRS1 / YhbY (CRM) domain 288 370 IPR001890 GO:0003723
Vian9g00539 405 Pfam CRS1 / YhbY (CRM) domain 167 252 IPR001890 GO:0003723
Vian9g00539 405 Gene3D - 287 381 IPR035920 -
Vian9g00539 405 FunFam CRS2-associated factor 1, chloroplastic 166 263 - -
Vian9g00539 405 SUPERFAMILY YhbY-like 287 377 IPR035920 -
Vian9g00539 405 ProSiteProfiles CRM domain profile. 285 381 IPR001890 GO:0003723
Vian9g00539 405 SMART CRS1_YhbY_2 167 252 IPR001890 GO:0003723
Vian9g00539 405 SMART CRS1_YhbY_2 287 370 IPR001890 GO:0003723
Vian9g00539 405 SUPERFAMILY YhbY-like 166 261 IPR035920 -
Vian9g00539 405 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 74 385 IPR044599 GO:0000373
Vian9g00539 405 FunFam CRS2-associated factor 1, chloroplastic 286 380 - -
Vian9g00539 405 Gene3D - 166 263 IPR035920 -
Vian9g00539 405 ProSiteProfiles CRM domain profile. 165 263 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00539 Vian-Chr9 6116242 6128020 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00539 - - gmx:100789954 617.846