Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00524 ATGCCACCTCAAATGCAGCCCTTCGCGGATTACCTCCGCACCGCGCCACAGGCAGACGGCGGTGAGAGGCGGACCCCACCGCTGAACCGAACCGTGAAGAAGACGCTGGTAGTAGAAGAGTCCTCCTTGGACAATCCGGATCTGGGCCCTTTCCTTCTGAAGATGGCCCGAGAAACAATAGCGTCCGGTGAGAGCCCGGTGAAGGCCCTGGATTTCGCCATTCGAGCCTCCAAGTCCTTCGAGCGATGTGCGGGCCCGGGCCTGGAGCTTGCCACGTGTCTCCACGTGGTTGCTGCGATACACAGCAGTTTGGGGCGGTTGGATGAGGCGGTTGAGGCTTTGGAAAGGTCCATTTTGTTGCTGGAAGGGGAAAACGAGTCGGGTCATGCCATGGCTCAGTTCTCCGGGTACATGCAACTTGGTGATACGTATTCCATGATTGGGCAGTTGGATAGGGCCATTTCGTGTTACGAGTCGGGTTTGAAGATCCAAATGGATGTTCTGGGTGAGTCCGACCCGAGAATAGCTGAAACTTGTAGGTACTTAGCTGAAGCTCATGTCCAAGCCATGCAATTTGAGCAAGCAGAGAAGTTCTGCAAGAAGACCCTAGAAATTCACAGGGAGCATTGCTCTCCTGCTTCTCTTACAGAAGCAACCGACAGGCGTCTAATGGCCCTTATATGTGAGGCCAAGGGAGACTATGAACCAGCTCTGGAGCACCTTGTCCTAGCTAGCATGTCAATGATCGCCAATGCACAAGAAAATGAGGTTGCAGCAATTGATGTTAGCATTGGAGATATTTACATGTCACTCTGTCGTTTTGATGAGGCTGTTTTCGCCTATCAGAAAGCACTAACAGTGTTCAAATCCACCAAAGGTGAAAGCCACAGTTCTGTGGCGTTAGTCTTCATTCGCCTTGCAGAGCTTTACTACAGGACGGGAAAATTAAGGGAGTCAAAATCATATTGCGAAAATGCCTTGAGAATATACAGTAAGCCCGTGGTAGGAACAACGGCTGGGGAGATTGCAAGTGGGTTGACTGAAATCTCTGGCATCTATGAAGCTCTAAATGAGCCTGAGGAGGCATTGAAGCTGCTGCAGAAGGCAGTGAAATTGTTGCAGGATATCCCTGGACAGTATAGGACAGTGGCAGGAATAGAAGCTCAAATGGGAGTAATGTTCTACATGGTTGGGAGGTACATGGAGGCATGGAAGTCTTTTGAGAATGCCATCACCAAGCTGAGAGCAAGTGGGGAGAAAAAGTCTACCTTTTTTGGAATTGTACTGAACCAGATGGGGCTGGCATGTGTGCAACTGTATAAAATAGGGGATGCTGCCAAACATTTTGAAGAAGCAAGAACGATATTGGAGAGGGAGTGTGGTACATATCATTCTGACACTCTTGGAGTGTATAGCAATCTTGCAGCAACTTATGATGCCTTGGGGAGAGTTGAAGATGCCATTGAGATATTGGAATACATACTAAAGATGAGAGAAGAAAAACTTGGAACTGCTAATCCAGATGTTGATGATGAAAAGAAGCGATTATTTGAGCTTTTGAAAGAATCAGGAAGAGTTCGGAATAGAAAGGGAAAAAAATCTCTTGAAAACCTTATAGATTCCAATTCCTTAAAGATGAAGAAGGAAGGAAAAAAGAGATGGGCTGCTTTTGGCTTGAGAACTTAA 1686 0.4757 MPPQMQPFADYLRTAPQADGGERRTPPLNRTVKKTLVVEESSLDNPDLGPFLLKMARETIASGESPVKALDFAIRASKSFERCAGPGLELATCLHVVAAIHSSLGRLDEAVEALERSILLLEGENESGHAMAQFSGYMQLGDTYSMIGQLDRAISCYESGLKIQMDVLGESDPRIAETCRYLAEAHVQAMQFEQAEKFCKKTLEIHREHCSPASLTEATDRRLMALICEAKGDYEPALEHLVLASMSMIANAQENEVAAIDVSIGDIYMSLCRFDEAVFAYQKALTVFKSTKGESHSSVALVFIRLAELYYRTGKLRESKSYCENALRIYSKPVVGTTAGEIASGLTEISGIYEALNEPEEALKLLQKAVKLLQDIPGQYRTVAGIEAQMGVMFYMVGRYMEAWKSFENAITKLRASGEKKSTFFGIVLNQMGLACVQLYKIGDAAKHFEEARTILERECGTYHSDTLGVYSNLAATYDALGRVEDAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKESGRVRNRKGKKSLENLIDSNSLKMKKEGKKRWAAFGLRT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00524 561 ProSiteProfiles TPR repeat profile. 258 291 IPR019734 GO:0005515
Vian9g00524 561 Pfam Tetratricopeptide repeat 257 331 - -
Vian9g00524 561 Pfam Tetratricopeptide repeat 427 500 - -
Vian9g00524 561 Pfam MalT-like TPR region 96 244 IPR041617 -
Vian9g00524 561 MobiDBLite consensus disorder prediction 1 27 - -
Vian9g00524 561 ProSiteProfiles TPR repeat profile. 134 167 IPR019734 GO:0005515
Vian9g00524 561 Coils Coil 104 124 - -
Vian9g00524 561 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 33 543 - -
Vian9g00524 561 SUPERFAMILY TPR-like 91 504 IPR011990 GO:0005515
Vian9g00524 561 Gene3D Tetratricopeptide repeat domain 245 425 IPR011990 GO:0005515
Vian9g00524 561 Gene3D Tetratricopeptide repeat domain 426 538 IPR011990 GO:0005515
Vian9g00524 561 SMART tpr_5 91 124 IPR019734 GO:0005515
Vian9g00524 561 SMART tpr_5 176 209 IPR019734 GO:0005515
Vian9g00524 561 SMART tpr_5 468 501 IPR019734 GO:0005515
Vian9g00524 561 SMART tpr_5 300 333 IPR019734 GO:0005515
Vian9g00524 561 SMART tpr_5 258 291 IPR019734 GO:0005515
Vian9g00524 561 SMART tpr_5 384 417 IPR019734 GO:0005515
Vian9g00524 561 SMART tpr_5 343 376 IPR019734 GO:0005515
Vian9g00524 561 SMART tpr_5 134 167 IPR019734 GO:0005515
Vian9g00524 561 SMART tpr_5 426 459 IPR019734 GO:0005515
Vian9g00524 561 Gene3D Tetratricopeptide repeat domain 87 244 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00524 Vian-Chr9 5761788 5765630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00524 97 300 Glycosyltransferase AT3G04240 24.186 7.54e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00524 - - gmx:100794697 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00524 9 5761788 5765630 Vian9g00524 9 5761788 5765630 ECH