Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00476 ATGGAGCCCGACGTCCGTTCACTCCTTAACTCTGCCTCCTCCTCCGCTTCTTCCTCCGACGCCGACGACGATGCTCCCCACCGCACCATCGATGAAATTCTCAACGACTGTGACACTTCTTCTTCCTCAAGCTCTCCCCCTTCCTCTCCCTCTCACTCTCTCTCTCCACTCACCAATTCCCATCCTCAAAACCCCACTCTTCAACCAAAACCACTCCAACCCGCACTCGATTCAATTTCTCGGCTCAAACCAGCCGAATTCTCCGACCGCACACGCGTTTCGCGTCCGTTCTCTTCTCTACTACAGGGCGTGCGGTCCAATGCGAAGCCGGGCGCCGCCCTCGCGGCTGCTGCTGCGGCGTCTCGATCCGTTCCTACGCCGCACGCGGCGGCGATCATTTCCAGGAGGAAATCTGCGGCTGCGATCAGCACTGAGTTGAGTTCGACCGCTGCCGCTAGCGACGATTATTCCGATGTTTCTTCTAAAGGCGAATTGGGCGAGCTTAGTGAGAAATACGATCCTGTGCCGCAGAGAATCGAGACTCAGTCTAGTGAAAGTGCTTCTGTTAACGGCGAGCGTGTTGAGAGTGATGCAGATATTGCCATTGATTTGAAGGCTGGTAGTGCCGCTGACAATCAGGTGCATATTGATACTGATAATGACAGTAGGGATGGCGATGATGATGGAAATGGCAATTATAATGATTCTTCTATAGTGAGTGAGGAGAATAGGAATTTAGATGAGGTTGACGGTTACCATGGGAAGGATATGAATTCTTCAACGTTTGATGAAGATAATAATGATCGTGACTTGGATGGGAATGATGGTTCTGAAAAGAGAATCACAGCTATGGATTCAGCTGTGGAAACAGAAGAAACGGTGGATAATGGTGAAAGCTCTGTGGATCATGTTAAAAATGAGCTGAGTGGTGGCGGTAGTGACGATGGTAGTTCATTGGGTGATGTTTCAGAGCTAGTGGAAGAGAGGCTTGAGGAATTGGAAAGCAGAAGGGCTTCTAAGAGAGCAGAGAAGAAACGAGAATTTTCAATGAAACCACTTGAATTGGCTGAAAAATTGGAGAAAAAGCGAGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCTGCCCAGCCAATGAGACTCGAGGGCGTTCGAAGAGGGTCCACGACGTTGGGATACTTTGATGTTGATGCTGATAATGCAGTCACCAGGGCGATTTCGTCCCAAACATTCAGGCGTGAGCAAGGTTCTGCCCGAGCCGTGGCAGTTCATGCTAATTATATTGCAGTAGGAATGTCAAAAGGGCTCATTGTTGTCTTTCCCAGTAAATATTCCATTCATCATGCTGATAGCTCTGATGGAAAGATGTTGATGCTTGCTATGCAAGGTGATCGGTTGCGTGCTCCAGTGACATCTATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGTCATCTTATCCTGTGGGATGTACAGAAAGGGGTTGTAGCAAAAGTTATTAGTGGTGAGCATACAGCACCAGTAGTACATACCTTATTTCTAGGTCAAGATCCTCAGAATACTCGTCAATTTAAAGCAGTTACTGGTGATTGTAAGGGTCTGGTTCTCTTGCACATTATCTCGGTTGTTCCTTTGTTTAGTAGATTCTCCATCAAAACTCAGTGTCTTCTTGATGGACAAAGTACAGGCTTGGTGCTTTCAGCTTCACCACTCCTTTTCGATGACTTCAGCGGAAGTGCTTCGCCTTTTTCTCAGGGAAATACCTCAACCCCAGCCAGCAGTATAAGCAGCATGATGGGTGTTGTTGGCGGAGATGCAGGTTGGAAACTCTTCAACGAATCCTCTTCTTTGTTGGAAGAAGGTGTGGTTGTATTTGTAACTCATCAAACTGCATTGGTGGTACGGCTGAGCCCTACATTGCAAGTCTATGCTCAACTCTCTAGGCCAGATGGGGTTCGGGAGGGGTCTATGCCGTATACTGCATGGAAATACATGACACAAACACATAGTTCTACTGAAAATATGTCTGCAGAAGCTAGTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGTAAGGTTCTGGTTGCAAAGTTAGTGAAATCAGAACTAAAAGTATATGGAAATTGGTCTCTCGAAGGTGCGGCTATAGGTCTAGCGTGGTTGGATGATCAGATGCTGGAAGTTCAAACTTCAAGTGGACAACTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTATTGCCATAGATGGTATTGGAGGAGATGATCTAGTCTCTTATCATACTCACTTCATCAATGTATTCGGAAATCCTGAGAAAGCTTATCATAACTCTGTTGCTGTAAGAGGAGCTTCTATTTATGTACTTGGTCCAACACATCTTCTCATTTCTCGTCTTCTACCTTGGAAAGAGCGTATTTCTGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTATGATGGCCATGCTCATGGTGTTATTGATCTTCCTAGAACCTTGGATGCCGTACATGAGGCCATAATGCCCTTCTTGGTGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTACATTTCAGTGGCATTCTGCAACCAAATAGGTAAAGTGGACCCATCCAATAATTCAAATAGTAGAAGCAATTCAGTACATTGTGAGATAAAGGAGCAATACAACCGTGTTGGTGGGGTTGCTGTTGAATTTTGTTGTCATATCAAACGGATGGACATTCTTTTTGATGAAATTTTCTCCAAGTTCGTGGGTGTTCAACAACGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAAGACATGCTTGGATCTCTACCTCCTGAGATCATGCAAGAATTGGTTGAGTATTATAGTACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCATATGGATATATCATCCTTGGATTTTAATCAGGTCGTCAGGTTATGCCGGGAGCATGGACTTTATAGTGCCCTGGTTTATGTCTTCAATAAAGGATTAGACGATTTTAGGGCTCCTCTGGAGGAGCTGTTTGCTGTCTTACAAAATAGCCAAAAGGAAAGTGCTACTGCACTTGGGTATAGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTCCCTTTCCACCAGGCCGTGGAACTATTCCTCCCACACGCTTACCTTCTCTTAGAAGAGAACTTGTGGAGTTTTTGTTAAAGGACTCCTGTACTTCGAAATCTCACACCATTTCAGATTCTGAGTCCAGAGGACCCCACCCGAATCTTTATCTTCTTTTAAAGTTAGACACTGAAGCTACCTTAGATGTCCTCAGATGTGCTTTTATTGAAGATGAAATTCCAAATGCCTGCTCATCTTCACCAGATGCAGCCAATAAACCTATAGAGGAAGCAAAAAAAGAAGATAAAGCTACTGAAACTCAAAATGCTTTGGTTCAGAACACAGTTGATGCACTCATTCAAATAATTGATACGAATATTGTTCAGACAGATACAACCTTTAGTAGTGGTGAAGATGGGTTGATAAAAGAGTGGTCTTCGAAGGACATAGGTTATCTATTTGAGTTCATTGCATATTATGTTGCTACCCAAAGAGCTAAAATTTCAAAGGGTGTACTGTGTCAAATATTGGAATATTTGACATCTGATAGTCACTCCTCTACCGATATTTCTGTTTATTGCTCAACTCCAAAAAACAGAGAGAAGCAAGTGCTAGCACTGTTGGAAGTACTTCCTAAGTCAGACTGGGATCCTTCATTTGTGCTAGATCTATGTGAAAGAGCCAAATATCATCAGGTTTGTGGATTGATCCATAGTTTCAGACATGAATATGTGGCTGCACTGGATAGTTATATGAATGATGTAGACGAGCCTATTCATACCTTTTCCTTTATTAATAAAACATTATCACAGTTGACTGACAATGAGCATGTAGCATTTCGGTCAGCAGTCATATTGCGAATTCCTGAATTGGTTGAACTAAGCAGGGAGGGTGCATTCCATGTGGTTATCAGTCATTTTAGCGAAGAAAGTTCCCATATCATAACTGAACTTCACTCTCATCCAAGAAGTCTTTTTCTTTATTTAAAGACGCTCATTGAGTTTCACTTATTTGGCACCCTAGATTTGTCTAATTTGAGCAAGGATGACACTATGAATCCTCTCAATGGAAGGCAGGTTAAGGATCACTCTGAAGGAGTTAGAGATTACTTAGAGAATATATCCAATTTCCCCAAGTTCATGCGGGAAAAACCTATTCACGTGCCTGATGATCTTATTGAGCTTTACCTTGAGTTATTATGCCAGTACGAAGGTAGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTTGAACATTGTTTACGTCTCTGTCAAGAATATGGCATTATAGATGCAACTGCGTTCTTATTAGAAAGGGTTGGTGATGTTGGTAAAGCTCTTTCAATTACACTTTCTGATCTTAATGATAAATTCGTTAAGCTTGATGCTGCTGTGGAAGCTGTAGTTTTAAACCGTAGCAGAGTTGGTTCTTCACATGTGGAAGTATTAGACACTGTTTTAAGAACAAAGGAGGGAAGTGACATCCAAGATCTATTGCGTGCCTGTATTGGTCTGTGTCAGCGGAACACCCCTCGTCTGAATCCTGAGGAGTCAGAAGCGCATTGGTTTAAATTACTTGATTCGTTTTGTGACCCATTGATCGATTCAAATGTTAAAGGAGCATATGAAAGTAAAAATCATTTTGGAATGTTAGCTGGATCAGCAGATTCACAACAGGACAAGGACGCCTATAAAAGCAGCTGGAAAATTTCAAAGTCCCGGAATGGTCATATCTTGAGAAAATTGCTATCACAGTTCATTAAAGAGATTGTAGAGGGAATGATTGGTTTTGTTCACCTTCCAACAATCATGTCTAAGCTTCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACTTACAATATTGGGAATGCTGGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCGTTGATAGAAGATGACTCGTTCTATACAATGAGTTTACTCAAGAAAGGGGCCTCTCATGGATATGCCCCCAGGAGTCTCGTGTGCTGTATTTGTAATTGCCTTCTTACAAAGAACTCTGGTAGCTCTGGAATTCGGATTTTCAACTGTGGCCATGCAATTCATGTCCAATGTGAAGTTTCGGAAATTGAGGCATCAAGCAGAGGATCTTCGTCGGGATGCCCTCTATGCATGCCTGGCAAGAAATCCCAGCAGTCCCGAAACAAATCAATCATTGCAACTAATGGCTTGGTCAACAAATTCTCATCAAGGCGCCAGTACCCCCATGGAAGTACCATCCATTCTCATGACAGTGATTTGACAGAGAATATGTATGGGCAGCAACAGATATCACGGTTTGAGATCTTGAGCAACCTGCAGAAAAATCAGAGATTTATGCAAATAGAAAACTTGCCTCAGTTGAAGCTTGCCCCGCCTGCTGTGTACCATGAAAAGGTAAATAAAGTTGCAAACTTTCTGACAGGCGAAAGTAGCAATAATTCTTCTGCTATTGAGAAACAAAGTAGAAACAAGCAAAACCGGGAGCTAAGAGTTAAGGGTTCATCAATCCGATTTCCTTTAAAATCAAGTATATTTGGCAAGGAGAAGACAAATAAGCGGTGA 5751 0.4271 MEPDVRSLLNSASSSASSSDADDDAPHRTIDEILNDCDTSSSSSSPPSSPSHSLSPLTNSHPQNPTLQPKPLQPALDSISRLKPAEFSDRTRVSRPFSSLLQGVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKSAAAISTELSSTAAASDDYSDVSSKGELGELSEKYDPVPQRIETQSSESASVNGERVESDADIAIDLKAGSAADNQVHIDTDNDSRDGDDDGNGNYNDSSIVSEENRNLDEVDGYHGKDMNSSTFDEDNNDRDLDGNDGSEKRITAMDSAVETEETVDNGESSVDHVKNELSGGGSDDGSSLGDVSELVEERLEELESRRASKRAEKKREFSMKPLELAEKLEKKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVTRAISSQTFRREQGSARAVAVHANYIAVGMSKGLIVVFPSKYSIHHADSSDGKMLMLAMQGDRLRAPVTSMSFNQQGDLLLAGYGDGHLILWDVQKGVVAKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLLHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPFSQGNTSTPASSISSMMGVVGGDAGWKLFNESSSLLEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREGSMPYTAWKYMTQTHSSTENMSAEASERVSLLAIAWERKVLVAKLVKSELKVYGNWSLEGAAIGLAWLDDQMLEVQTSSGQLYLFSKDGTVIHQTSIAIDGIGGDDLVSYHTHFINVFGNPEKAYHNSVAVRGASIYVLGPTHLLISRLLPWKERISVLRKAGDWMGALNMAMTLYDGHAHGVIDLPRTLDAVHEAIMPFLVELLTSYVDEVFSYISVAFCNQIGKVDPSNNSNSRSNSVHCEIKEQYNRVGGVAVEFCCHIKRMDILFDEIFSKFVGVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELFAVLQNSQKESATALGYRMLVYLKYCFTGLPFPPGRGTIPPTRLPSLRRELVEFLLKDSCTSKSHTISDSESRGPHPNLYLLLKLDTEATLDVLRCAFIEDEIPNACSSSPDAANKPIEEAKKEDKATETQNALVQNTVDALIQIIDTNIVQTDTTFSSGEDGLIKEWSSKDIGYLFEFIAYYVATQRAKISKGVLCQILEYLTSDSHSSTDISVYCSTPKNREKQVLALLEVLPKSDWDPSFVLDLCERAKYHQVCGLIHSFRHEYVAALDSYMNDVDEPIHTFSFINKTLSQLTDNEHVAFRSAVILRIPELVELSREGAFHVVISHFSEESSHIITELHSHPRSLFLYLKTLIEFHLFGTLDLSNLSKDDTMNPLNGRQVKDHSEGVRDYLENISNFPKFMREKPIHVPDDLIELYLELLCQYEGSSVLKFLEMFDSYRVEHCLRLCQEYGIIDATAFLLERVGDVGKALSITLSDLNDKFVKLDAAVEAVVLNRSRVGSSHVEVLDTVLRTKEGSDIQDLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLIDSNVKGAYESKNHFGMLAGSADSQQDKDAYKSSWKISKSRNGHILRKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYAPRSLVCCICNCLLTKNSGSSGIRIFNCGHAIHVQCEVSEIEASSRGSSSGCPLCMPGKKSQQSRNKSIIATNGLVNKFSSRRQYPHGSTIHSHDSDLTENMYGQQQISRFEILSNLQKNQRFMQIENLPQLKLAPPAVYHEKVNKVANFLTGESSNNSSAIEKQSRNKQNRELRVKGSSIRFPLKSSIFGKEKTNKR 1916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00476 1916 PANTHER VACUOLAR PROTEIN SORTING VPS41 210 1846 IPR045111 GO:0006623
Vian9g00476 1916 Pfam Region in Clathrin and VPS 1444 1512 IPR000547 GO:0006886|GO:0016192
Vian9g00476 1916 ProSiteProfiles Zinc finger RING-type profile. 1725 1773 IPR001841 -
Vian9g00476 1916 MobiDBLite consensus disorder prediction 1 111 - -
Vian9g00476 1916 MobiDBLite consensus disorder prediction 241 286 - -
Vian9g00476 1916 ProSitePatterns Trp-Asp (WD) repeats signature. 482 496 IPR019775 -
Vian9g00476 1916 MobiDBLite consensus disorder prediction 176 191 - -
Vian9g00476 1916 MobiDBLite consensus disorder prediction 211 322 - -
Vian9g00476 1916 Coils Coil 323 343 - -
Vian9g00476 1916 SUPERFAMILY WD40 repeat-like 409 540 IPR036322 GO:0005515
Vian9g00476 1916 MobiDBLite consensus disorder prediction 147 194 - -
Vian9g00476 1916 Gene3D - 385 544 IPR015943 GO:0005515
Vian9g00476 1916 MobiDBLite consensus disorder prediction 160 174 - -
Vian9g00476 1916 Pfam Golgi CORVET complex core vacuolar protein 8 943 1127 IPR025941 -
Vian9g00476 1916 MobiDBLite consensus disorder prediction 216 230 - -
Vian9g00476 1916 CDD RING-H2 1725 1774 - -
Vian9g00476 1916 ProSiteProfiles Trp-Asp (WD) repeats profile. 470 504 IPR001680 GO:0005515
Vian9g00476 1916 SUPERFAMILY RING/U-box 1718 1774 - -
Vian9g00476 1916 MobiDBLite consensus disorder prediction 35 73 - -
Vian9g00476 1916 MobiDBLite consensus disorder prediction 1872 1897 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00476 K20178 - gmx:100780869 3071.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00476 9 4887884 4903235 Vian9g00476 9 4887884 4903235 ECH