Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00475 ATGTCTTTCACTGCAACCAAGTTCGCACCCTCTCCTCTTTCTCTCAATTCCACCACCCCCAGATCCAATGACAAGCCTCTCTCTTTCTCCTTCGATCACTCCAAAACCAACCCTTCTTCCTCTTTTCTTGGATCCACTCGCAAGCTTCTTCGCTTCACTGCTCTTGCCAAACCTCGTGCTCAGGCTCGTGCTTCTACCCCTGTTGCTGATGTTCTTCTCCAGCAAACCTCCAATCTGCTTATTACTAAAGAGGAAGGGTTGGAGCTGTATGAAGACATGATACTAGGGAGGTTCTTCGAGGACAAATGTGCTGAGATGTATTATAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAGGCTGTGTCAACTGGGTTCATCAAGCTTCTGAAGAAGGAGGATTATGTAGTGAGCACCTACAGAGATCATGTTCATGCATTGAGTAAGGGGGTCTCCTCTCGAGCCGTAATGAGTGAACTGTTTGGAAAGGCAACAGGATGCTGCCGAGGCCAGGGCGGTTCAATGCATATGTTCTCAAAAGAGCACAACATGCTTGGCGGTTTTGCATTCATTGGTGAAGGAATTCCAGTGGCCACTGGGGCTGCATTTTCGAGCAAATACAGAAAGGAGGTGTTGAATGAGGCAGATGCTGATCAGGTGACATTGGCTTTTTTCGGAGATGGGACTTGTAACAATGGCCAATTCTATGAATGCCTGAACATGGCAGCTCTGTGGAAATTGCCAATTGTGTTTGTGGTGGAGAATAATTTGTGGGCTATTGGAATGTCACATCTCAGAGCAACTTCAGATCCTCAGATATGGAAGAAAGGACCGGCGTTTGGAATGCCAGGGATTCATGTTGATGGGATGGATGTTTTGAAGGTCAGAGAGGTGGCAAAAGAGGCAATTGAAAGGGCTAGAAGGGGAGAGGGACCAACCCTAGTGGAATGTGAAACCTATAGATTTAGAGGACATTCATTGGCTGACCCTGATGAGCTTCGTGACCCTGCTGAGAAGGAACACTATGCTGGTAGGGACCCCATCACTGCACTGAAACAATACCTTTTTGAGAACAATTTAGCCAGTGAGCAAGAATTGAAGGCCATAGAGAAGAAAATCGATGAGATTCTTGATGATGCAGTTGAGTTTGCAGACAACAGCCCTCTTCCACCCCGTAGTCAGCTTCTGGAGAATGTGTTTGCTGATCCAAAAGGCTTTGGAATTGGACCAGATGGAAGGTATAGATGTGAGGATCCAAAATTCACTGAAGGCACTGCTCAAGTCTAA 1296 0.4645 MSFTATKFAPSPLSLNSTTPRSNDKPLSFSFDHSKTNPSSSFLGSTRKLLRFTALAKPRAQARASTPVADVLLQQTSNLLITKEEGLELYEDMILGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDYVVSTYRDHVHALSKGVSSRAVMSELFGKATGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRKEVLNEADADQVTLAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGIHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEHYAGRDPITALKQYLFENNLASEQELKAIEKKIDEILDDAVEFADNSPLPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAQV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00475 431 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 83 404 IPR017597 GO:0004739|GO:0006086|GO:0043231
Vian9g00475 431 Coils Coil 362 389 - -
Vian9g00475 431 CDD TPP_E1_PDC_ADC_BCADC 89 387 - -
Vian9g00475 431 Gene3D - 53 412 - -
Vian9g00475 431 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 74 406 IPR029061 -
Vian9g00475 431 FunFam Pyruvate dehydrogenase E1 component subunit alpha 55 412 - -
Vian9g00475 431 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 74 414 - -
Vian9g00475 431 Pfam Dehydrogenase E1 component 93 393 IPR001017 GO:0016624
Vian9g00475 431 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00475 Vian-Chr9 4878051 4881058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00475 5 431 Acyl Lipid Metabolism Gene Families AT1G01090 78.341 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00475 K00161 - gmx:100793091 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00475 9 4878051 4881058 Vian9g00475 9 4878051 4881058 ECH