Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00384 ATGTCTTGGGCAGGCCCTGAGGATATTTACCTTTCTACTTCACTTGCTAGCTATCTTGACAGTGAGGCTGATTTTGTATTGTGTACTAATTTGTATGGTCTGACAATAATTGTTGTTGTAGAGAAACTTCTTGTATTACTGAGAGATGGCAGAAAGCTCATGGGGATACTTCGCTCTTTTGATCAATTTGCTAATGCAGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTGTATTGTGACATCCCTTTGGGTCTCTATGTAATCCGTGGAGAAAATGTTGTTCTAATCGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCCGAACACATGACTCGTGTTTCTACAGCAGAAATCAAGAGGGCACAGAAAGCAGAAAGGGAGGCCTCAGATCTGAAAGGGACTATGAGGAAAAGAATGGAATTCCTTGACTTTGAATAG 447 0.4273 MSWAGPEDIYLSTSLASYLDSEADFVLCTNLYGLTIIVVVEKLLVLLRDGRKLMGILRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDFE 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00384 148 ProSiteProfiles Sm domain profile. 30 105 IPR047575 GO:0003723
Vian9g00384 148 FunFam U6 snRNA-associated Sm-like protein LSm1 33 145 - -
Vian9g00384 148 SMART Sm3 34 101 IPR001163 -
Vian9g00384 148 SUPERFAMILY Sm-like ribonucleoproteins 42 103 IPR010920 -
Vian9g00384 148 Gene3D - 38 146 - -
Vian9g00384 148 CDD LSm1 48 102 IPR034104 GO:0000956
Vian9g00384 148 PANTHER LSM1 39 142 IPR044642 -
Vian9g00384 148 Pfam LSM domain 41 100 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00384 Vian-Chr9 3685899 3688058 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00384 K12620 - gmx:100306352 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00384 9 3685899 3688058 Vian9g00384 9 3685899 3688058 ECH