Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00372 ATGGCCCTTACGAAACAAATCATGGGTTCTTCATTGCTAGAGAGGTCCTTGTTTGTTCCTTCTTCCCCTTCATCACTTTTCAACCAAACTCGGTTCTTGGTTCCTTTGGAGAGCAAGAGAGTTCTGAGGGTAAGGAAGGCTGCAAAGTTTCCTGTGGCAACTATAAGTGAAGATTTGGTCAAGGGCTCTTCTTCTTCTTCATCATCATCTTCTTCTTCACCAGCATCTTCTTCCACTTCTTTAGTGTCTACAGAGAAGCCAGTGAAATTCAAGGTTAGAGCTGTTATCACAGTGAGGAACAAGATCAAAGAGGATTTGAAAGAGACCATTGTGAAGCATATTGATGCTCTGGCTGACAAGATTGGAAGGAATGTTGTCCTTGAACTTGTTAGCACCGAGATTGATCCAAAGACCAAAGCTGCAAAGAAGAGTACTGAAGCAGTGCTGAAGGATTGGTCAAAGAAGTCCAATCTTAAGGTGGAGAGAGTTAATTACACAGCTGAATTCATAGTTGACTCTAACTTTGGGGAGCCAGGAGCTATTACTGTGACAAACAAACACCAGAAAGAGTTCTTCTTGGAAAGCATAACCATTGAAGGATTTGCCACTGGACCAGTTCATTTCCCCTGCAATTCTTGGGTTCAAGCAAGAAAAGATCATCCCGGAAAAAGGATTTTCTTTTCCAACAAGCCTTATTTACCTGGTGATACACCTGCTGGGCTTAGATTATTGAGGGAAAAAGAGCTGAGAAATCTCAGAGGTGATGGCAAAGGAGTGAGAAACTTATCTGACAGAATATATGATTATGATATATACAATGATTTGGGAAATCCAGACAAAGGTATTGAATATGCCAGACCAAATCTTGGAGGATCAGATATGTATCCATACCCAAGACGGTGTCGGACAGGCCGTGAGCCCAGCGACACAGATATGTATGCAGAGAGTCGTGTGGAGAAGCCACTGCCTATGTATGTGCCAAGGGATGAACGTTTTGAGGAGTCAAAGCAGAACACATTCACAGTGAAGAGGCTGAAGGCAGTGCTGCATAACTTGATTCCTGGTCTTAAGGCCAGTCTTTCTGCTAGCAACCAAGACTTCAATGAATTCTCAGATGTGGATGGTCTTTACAGTGAAGGGTTGCTCATAAAGTTGGGGTTGCAAGATGAAGTCTTGAAAAAAATTCCTTTTGTCAGCAAGATCCAAGAGTCCAGCCAGGGACTTCTTAAATATGACACCCCTAAGATTATTTCCAAGGACAAATTTGCATGGTTGCGAGATGACGAATTTGCCCGTCAAGCAATTGCAGGAGTTAACCCTGTTAGCATTGAGAAGCTCAAAGTTTTTCCACCAGTTAGCAAACTAGACCCTCAAATTTATGGCCCCCAAGAGTCTGCTCTTAAAGAAGAACATATTTTGAGTCAACTCGATGGCATGACAGTCCAAGAGGCTATAAATGAAAACAAGCTGTTTATCGTTGACTACCATGATATCTACCTTCCTTTCCTAGAAGGGATCAATGCCCTTGATGGTAGGAAATCATATGCCACACGTACCATATTTTTCTCCACACCACGTGACACTCTCAAACCTGTGGCCATTGAACTTAGCCTCCCTTTTGCTGGACCTAGTTCTAGATCAAAGCGTGTGGTTACACCACCTGTTGATGCAACCACCAACTGGATGTGGATGCTTGCTAAGGCACATGTTTGCTCCAATGATGCTGGGGTGCACCAACTTGTTAACCACTGGTTACGTACACATGCAAACTTGGAACCATTTATATTGGCTGCTCATAGGCAATTAAGTGCCATGCATCCAATTTACAAGCTATTGGACCCACACATGAGGTATACTTTGGAGATCAATGCCTTAGCTAGACAGAGTTTAATCAATGCTGATGGAATCATTGAAAATTGCTTCACTCCTGGACGCTACGCTATGGAGATTAGTTCTGCTGCTTACAAGAACTTTTGGCGCTTTGACATGGATAGTCTACCTGCAGATCTCATCCGCAGGGGAATGGCAGTACCTGACCCAACACAACCACATGGTCTAAAGCTAACATTGGAAGACTACCCTTATGCAGCTGATGGACTACTAATCTGGTCTGCCATAGAAGACTGGGTTCGCACCTATGTGAACCATTACTACCCTCATGCAAGCCTCATATGCAACGACAAAGAGCTACAAGCTTGGTACTCGGAGTCAATCAATGTGGGTCATGCTGATCTCAGGCATGAAAGTTGGTGGCCTACATTGAACAACAGTGAGGATCTTGTCTCCATTCTTTCCATATTGATCTGGAATGCATCTGCACAACATGCTGCTCTTAACTTTGGGCAATACCCTTACGGAGGGTATGTGCCTAATCGTCCACCACTGACGAGAAGATTAATTCCAGAAGAGGGTGATCCAGAATACGCAAGTTTTCTTGCTGACCCTCAAAAATATTATCTGAATGCATTGCCTAGCTTGTTGCAAGCAACAAAGTTTATGGCTGTGGTTGACACACTCTCCACTCACTCACCTGATGAGGAGTACTTGGGGGAGAGACAACAACCTTCGATTTGGTCAGGTGATGCTGAGATCATCGAGGCATTCTATGATTTCTCTGCAAAGGTTAGACAGATAGAGAAGGTGATTGATAGCAGGAACCTTGATAGGAGTCTAAGGAACCGATGTGGTGCAGGGGTTTTGCCTTATGAGTTGCTTGCTCCTAGCTCTGAATCTGGTGTTACATGCAGAGGGGTACCTAATAGTGTGTCTACATAA 2775 0.4375 MALTKQIMGSSLLERSLFVPSSPSSLFNQTRFLVPLESKRVLRVRKAAKFPVATISEDLVKGSSSSSSSSSSSPASSSTSLVSTEKPVKFKVRAVITVRNKIKEDLKETIVKHIDALADKIGRNVVLELVSTEIDPKTKAAKKSTEAVLKDWSKKSNLKVERVNYTAEFIVDSNFGEPGAITVTNKHQKEFFLESITIEGFATGPVHFPCNSWVQARKDHPGKRIFFSNKPYLPGDTPAGLRLLREKELRNLRGDGKGVRNLSDRIYDYDIYNDLGNPDKGIEYARPNLGGSDMYPYPRRCRTGREPSDTDMYAESRVEKPLPMYVPRDERFEESKQNTFTVKRLKAVLHNLIPGLKASLSASNQDFNEFSDVDGLYSEGLLIKLGLQDEVLKKIPFVSKIQESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGVNPVSIEKLKVFPPVSKLDPQIYGPQESALKEEHILSQLDGMTVQEAINENKLFIVDYHDIYLPFLEGINALDGRKSYATRTIFFSTPRDTLKPVAIELSLPFAGPSSRSKRVVTPPVDATTNWMWMLAKAHVCSNDAGVHQLVNHWLRTHANLEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQSLINADGIIENCFTPGRYAMEISSAAYKNFWRFDMDSLPADLIRRGMAVPDPTQPHGLKLTLEDYPYAADGLLIWSAIEDWVRTYVNHYYPHASLICNDKELQAWYSESINVGHADLRHESWWPTLNNSEDLVSILSILIWNASAQHAALNFGQYPYGGYVPNRPPLTRRLIPEEGDPEYASFLADPQKYYLNALPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSIWSGDAEIIEAFYDFSAKVRQIEKVIDSRNLDRSLRNRCGAGVLPYELLAPSSESGVTCRGVPNSVST 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00372 924 ProSiteProfiles PLAT domain profile. 106 228 IPR001024 GO:0005515
Vian9g00372 924 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 90 232 IPR036392 GO:0005515
Vian9g00372 924 FunFam Lipoxygenase 233 335 - -
Vian9g00372 924 Gene3D - 557 923 - -
Vian9g00372 924 Pfam Lipoxygenase 241 907 IPR013819 GO:0016702|GO:0046872
Vian9g00372 924 PRINTS Lipoxygenase signature 560 577 IPR013819 GO:0016702|GO:0046872
Vian9g00372 924 PRINTS Lipoxygenase signature 598 618 IPR013819 GO:0016702|GO:0046872
Vian9g00372 924 PRINTS Lipoxygenase signature 578 595 IPR013819 GO:0016702|GO:0046872
Vian9g00372 924 SMART LH2_4 90 229 IPR001024 GO:0005515
Vian9g00372 924 PANTHER LIPOXYGENASE 105 923 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vian9g00372 924 FunFam Lipoxygenase 557 923 - -
Vian9g00372 924 ProSitePatterns Lipoxygenases iron-binding region signature 2. 605 615 IPR020834 GO:0016702|GO:0046872
Vian9g00372 924 CDD PLAT_LH2 90 229 IPR042057 -
Vian9g00372 924 PRINTS Plant lipoxygenase signature 409 425 IPR001246 GO:0016491
Vian9g00372 924 PRINTS Plant lipoxygenase signature 296 315 IPR001246 GO:0016491
Vian9g00372 924 PRINTS Plant lipoxygenase signature 364 385 IPR001246 GO:0016491
Vian9g00372 924 PRINTS Plant lipoxygenase signature 448 467 IPR001246 GO:0016491
Vian9g00372 924 PRINTS Plant lipoxygenase signature 836 850 IPR001246 GO:0016491
Vian9g00372 924 PRINTS Plant lipoxygenase signature 263 279 IPR001246 GO:0016491
Vian9g00372 924 PRINTS Plant lipoxygenase signature 224 245 IPR001246 GO:0016491
Vian9g00372 924 PRINTS Plant lipoxygenase signature 515 539 IPR001246 GO:0016491
Vian9g00372 924 PRINTS Plant lipoxygenase signature 198 216 IPR001246 GO:0016491
Vian9g00372 924 Gene3D - 336 421 IPR027433 -
Vian9g00372 924 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 231 924 IPR013819 GO:0016702|GO:0046872
Vian9g00372 924 MobiDBLite consensus disorder prediction 60 80 - -
Vian9g00372 924 SUPERFAMILY Lipoxigenase 234 923 IPR036226 -
Vian9g00372 924 Gene3D - 422 555 - -
Vian9g00372 924 Gene3D - 233 335 - -
Vian9g00372 924 Gene3D PLAT/LH2 domain 77 232 - -
Vian9g00372 924 FunFam Lipoxygenase 423 555 - -
Vian9g00372 924 Pfam PLAT/LH2 domain 147 227 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00372 Vian-Chr9 3552641 3557753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00372 1 923 Acyl Lipid Metabolism Gene Families AT1G17420 71.490 0.0 1373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00372 K00454 - gmx:100793614 1733.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00372 9 3552641 3557753 Vian9g00372 9 3552641 3557753 ECH