Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00368 ATGGCGGTTTCAACTATAGCCTTGTACGCGAGTCCGCCGAGCAGCGTGTGTTCCACGCCTCACCCTTGCCAGATCAACGCTCACGCTTCCTACGACTTCGAATTGGGGTCGCGATCTTCGTCGCCGGCGGCTTCGACGGCTCCTCCGTCGACGTCGCAGAAGCCTGTGATGGGCGGACTTTCGTGCCTGTTCTCGTCTCCGGCGGCGGCGATGAAACACGCGGCGTTGTCGTCGAACTTTACCGGTGAGGAGGACGATTTGAAGGAGTTGGGCAGTTCCTTCTCGTATTCTCCAAGCAAGTTTGGTGGGTCTTCTTGGAAGAGGGATCAGAGTCCCGTGTCTGTTTTTCATGGTCCTGTTTCGTGTAGTGGTAGCAGCAGAAGCCCCATTAGTTCTACCTCTGTGAGAAGTATCAGGGGTGGGACTAGTGGGTTGTTTCATGGGTTCGTGAGGAATGCGTTGGGGTCTTGTTTGGATTATGACTTAGATGCGGGTGATTCATCTGCCGCGCTTGTGGATGAGTTGACCTTCAATTTAGAGGATAATTTGGTGGAAGGTGGGTTTCATTTTGAGCCCTATGCTAGAAAGTTGCTGCTGGGGGCGCAGTTGAGACACAAGATCTTCTGCGAGGAGTTTGTCATCAAGGCCTTTTGTGAAGCTGAGAAGGCACACAGAGGGCAGATGCGGGCTAGTGGGGATCCTTACTTGCAGCATTGTTTGGAGACCGCCGTGTTGCTGGCTTTGATTGGTGCCAATTCCACCGTTGTGGCTGCGGGGCTCTTACATGACACGCTGGATGATGCTTTTCTGACTTACGATTATATATGTGGAGCATTTGGCGCTGGAGTTGCTGATTTAGTCGAAGGGGTTTATCGTTCTGTAGGAATGAATTGCCATATTACCCATTCGATGCCCTGGATTCGTGTATCTAAACTGAGCCACTTAAGCAAACTGGCTCGAGAAAATAATACAGCTTGCAAGTCAGTTGAAGCGGACCGCTTGCACACTATGTTCCTTGCCATGGCAGATGCAAGAGCTGTCCTCATTAAACTGGCAGATCGGTTGCATAATATGATGACACTAGATGCATTGCCTGTGACCAAGCGGCAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCATTGGCCAATCGCTTAGGAATCTCTAGCTGGAAAGAACAATTGGAGAATTTGTGTTTTAAGCATCTCAACCCAAGCCAGCACGAGGAGCTTTCTTCAAAGCTTGTGGAGTCGTACGATGATGCAATGATTACTTGTGCGATAGAGAGATTAGAGCAAGCCCTTAAAGATGAAGGCATATCTTATAATGTCATTTCTGGGCGGCACAAGAGCTTGTATAGCGTTTACTGCAAAATGTTGAAGAAGAAACTTACCATTGATGATATCCATGACATTTATGGACTGCGCTTGATTGTTGACAAAGAAGAAGACTGTTATAAAGCCTTAACAACTGTCCATCGGTTATGGTCTGAGGTGCCTGGAAAGCTGAAAGATTACATATGTCGCCCCAAGTTCAATGGATACCAATCTCTGCATACTGTGGTGATGGGTGAAGGCAACGTTCCCCTGGAAGTGCAAATTCGAACAAAAGATATGCACTTGCAAGCAGAATTTGGATTTGCAGCTCACTGGAGATACAAAGAAGATGATTGCCAGCATTCGTCATTTGTGCTTCAGATGGTGGAGTGGGCTCGGTGGGTTGTTACCTGGCAGTGCGAAGCAATGAGTGGAGACTGTTCATCTGTTAGATATGCTGATTCAGTGAAGCCTCCATGCAAGTTCCCTTCCCATGCTGCCGATTGCCCATATTCCTATAGGCCCGATTGTGGTCAGAACGGGCCCGTGTTCGTCATCATGATCGAGAATGACAAGATGTCTGTTCAAGAATTCAGTGCAAACTCAACGATATTGGATTTGTTGGAGAGAGCTGGGCGTGCAAGCTCTAGGTTGACAACATATAGGTTCCCATTGAAGGAAGAGCTGAGGCCAAGGCTGAATCACAAGCCTGTGAGTGATCCGAAAAGCAAGTTGAAGATGGGAGATGTTATTGAACTTACACCAGCCATACCTGATAAGTATCTTACAGAATACAGGGAAGAAATCCAGCGTATGTATGATCGAGGGCTAACCGTATCAACCATGGGAACTTCTTCTTCAAGTACCATGGTTGGCTCAAGAAGTTGA 2208 0.4792 MAVSTIALYASPPSSVCSTPHPCQINAHASYDFELGSRSSSPAASTAPPSTSQKPVMGGLSCLFSSPAAAMKHAALSSNFTGEEDDLKELGSSFSYSPSKFGGSSWKRDQSPVSVFHGPVSCSGSSRSPISSTSVRSIRGGTSGLFHGFVRNALGSCLDYDLDAGDSSAALVDELTFNLEDNLVEGGFHFEPYARKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYICGAFGAGVADLVEGVYRSVGMNCHITHSMPWIRVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVTKRQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPSQHEELSSKLVESYDDAMITCAIERLEQALKDEGISYNVISGRHKSLYSVYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTTVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGNVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSGDCSSVRYADSVKPPCKFPSHAADCPYSYRPDCGQNGPVFVIMIENDKMSVQEFSANSTILDLLERAGRASSRLTTYRFPLKEELRPRLNHKPVSDPKSKLKMGDVIELTPAIPDKYLTEYREEIQRMYDRGLTVSTMGTSSSSTMVGSRS 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00368 735 SMART hd_13 231 367 IPR003607 -
Vian9g00368 735 ProSiteProfiles S4 RNA-binding domain profile. 672 709 - -
Vian9g00368 735 SMART RelA_SpoT_2 448 558 IPR007685 GO:0015969
Vian9g00368 735 SUPERFAMILY HD-domain/PDEase-like 196 405 - -
Vian9g00368 735 Gene3D Beta Polymerase, domain 2 409 538 IPR043519 -
Vian9g00368 735 FunFam GTP pyrophosphokinase RelA 406 538 - -
Vian9g00368 735 Pfam Region found in RelA / SpoT proteins 448 557 IPR007685 GO:0015969
Vian9g00368 735 ProSiteProfiles HD domain profile. 235 358 IPR006674 -
Vian9g00368 735 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 309 699 - -
Vian9g00368 735 CDD HDc 233 380 IPR003607 -
Vian9g00368 735 Gene3D Hypothetical protein af1432 204 405 - -
Vian9g00368 735 CDD NT_Rel-Spo_like 427 546 IPR007685 GO:0015969
Vian9g00368 735 Pfam HD domain 220 389 - -
Vian9g00368 735 SUPERFAMILY Nucleotidyltransferase 395 584 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00368 Vian-Chr9 3470010 3473271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00368 230 555 EF-hand Containing Proteins AT3G17470 29.971 3.41e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00368 K00951 - gmx:100787301 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00368 9 3470010 3473271 Vian9g00368 9 3470010 3473271 ECH