Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00360 ATGATTGAAATTTTTGTTCTCTTGGCTCTTCTATCATTCACTTCCGATGCGGCAGTCAATGATTTCTGTGTAGCAGACTTAAAGGGTCCAGATAGTCCTTCAGGTTATCAGTGCAAGCCACCGAAATCCGTCACAGTGGATGACTTTGTGTTTTCTGGCTTTGTAGCTGGAAACACCACAAACATTTTCCGTGCTGCATTAACCTCTGCAGTTGTCACTGATTTTCCAGGTGTGAATGGTCTTGGTGTTTCCGCAGCACGGTTAGACATAGAAAAAGGTGGATCAGTCCCAATGCACACACACTCTGGTGCCACTGAACTTTTGATAATGGTGAAAGGTCAAATCACAGCTGGTTTTATGACACCATTTGCAGTTTATACGAAGACACTGAAACCAGGAGATGTTATGGTTTTCCCACAAGGGCAACTGCATTTTCAAGTGAATTCTGGAAAGAGAAAAGCCACTGCTTTTCTGGCTTTCAGTAGCGCAAACCCTGGAGTACAATTGCTTGACCTTATATTGTTTGGTAACGACTTACCTTCTGCCTTGATTGCAGAAACGACCTTCCTTGAAATTGGCCAAGTGAAGAAGGTTAAGGGACGATTCGGTGGCAGAGGCTAG 621 0.4396 MIEIFVLLALLSFTSDAAVNDFCVADLKGPDSPSGYQCKPPKSVTVDDFVFSGFVAGNTTNIFRAALTSAVVTDFPGVNGLGVSAARLDIEKGGSVPMHTHSGATELLIMVKGQITAGFMTPFAVYTKTLKPGDVMVFPQGQLHFQVNSGKRKATAFLAFSSANPGVQLLDLILFGNDLPSALIAETTFLEIGQVKKVKGRFGGRG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00360 206 SUPERFAMILY RmlC-like cupins 19 201 IPR011051 -
Vian9g00360 206 PRINTS Germin signature 128 148 IPR001929 GO:0030145
Vian9g00360 206 PRINTS Germin signature 99 119 IPR001929 GO:0030145
Vian9g00360 206 PRINTS Germin signature 161 176 IPR001929 GO:0030145
Vian9g00360 206 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 15 197 - -
Vian9g00360 206 Pfam Cupin 57 191 IPR006045 -
Vian9g00360 206 FunFam Auxin-binding protein ABP19a 16 205 - -
Vian9g00360 206 Gene3D Jelly Rolls 16 205 IPR014710 -
Vian9g00360 206 CDD cupin_OxOx 17 202 IPR001929 GO:0030145
Vian9g00360 206 SMART Cupin_1_3 52 196 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00360 Vian-Chr9 3400378 3400998 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00360 1 204 Miscellaneous Gene Families AT5G20630 56.796 1.14e-78 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00360 - - gmx:100527498 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00360 9 3400378 3400998 Vian9g00360 9 3400378 3400998 ECH