Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00359 ATGAACAGGATTGTGATTCTCTTACTTTGTGTCCTTTTTTCGTCCACTTCCCATGCTTCTTTTCCGGAAAAGTTCTGCAAGGCTGACCTCAACGGTCCAGACAGCCCTTCTGGCTATCTCTGCCTGCCATCTGAAACAGTAACAGCTGCAGACTTTAAGTACACTTTTAATGGAAAAGCAGGCATTCTAGTCCCACCCAACACTCTAGTATTCCCTGCAACTGTTGCTCAGTATCCTATACTCAACGGTCTTGGAATTTCTGGAGCAATTGTAGAGATCCCGGAAGGTGGAATTCTTCCAGTGCATGATCATGATGCAACTGAAATAGTACTGGTGATTGAAGGTCAAATTGATGTTGGAATCTTGACACCTCGGAAAGCTTTTCGCAATAAACTTACACCGGGAGATGTTTTCCTTTTTCCAAAAGGACTGCTGCATTATCTTATCAATTCTGGTCGTGGGAAAGCCGTTGCTTTTGCCGCTTTTAGTTCCCCTAACCCTTCTTTTCGTTTTCTTTATGAAGAACTGTTCACCAACGACGTCCCTAGCATCACCATTTCCCAGATTAGCTTCCTTGATGTAGCCCAAGTCAGGAAGCTCAAGGCTCGTTTCAATGGCACCGGCTAG 627 0.4466 MNRIVILLLCVLFSSTSHASFPEKFCKADLNGPDSPSGYLCLPSETVTAADFKYTFNGKAGILVPPNTLVFPATVAQYPILNGLGISGAIVEIPEGGILPVHDHDATEIVLVIEGQIDVGILTPRKAFRNKLTPGDVFLFPKGLLHYLINSGRGKAVAFAAFSSPNPSFRFLYEELFTNDVPSITISQISFLDVAQVRKLKARFNGTG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00359 208 SMART Cupin_1_3 54 198 IPR006045 -
Vian9g00359 208 Gene3D Jelly Rolls 19 208 IPR014710 -
Vian9g00359 208 Pfam Cupin 68 170 IPR006045 -
Vian9g00359 208 SUPERFAMILY RmlC-like cupins 54 206 IPR011051 -
Vian9g00359 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Vian9g00359 208 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Vian9g00359 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Vian9g00359 208 CDD cupin_OxOx 18 204 IPR001929 GO:0030145
Vian9g00359 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00359 Vian-Chr9 3396436 3397062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00359 4 207 Miscellaneous Gene Families AT5G20630 41.981 5.81e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00359 - - vum:124837134 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00359 9 3396436 3397062 Vian9g00359 9 3396436 3397062 ECH