Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00358 ATGAAGAAGATAACTCAGATTCTTTTCCTCTTCAGTCTTCTCTCATTCACTACCTATGCTGCTGTGAATGATTTCTGTGTAGCAGACCTAAAGGGTCCAGATACTCCTTCAGGCTATCAGTGCAAACCACCTAACACAGTGACGGCGGATGACTTTGTGTTCTCTGGCTTGGTTGCGGGAAACACCACAAACACTTTCAATGCTGCATTAACCTCTGCATTTGTCACTGATTTTCCAGGTTTGAATGGTCTTGGTGTTTCCGCAGCACGGTTAGACATAGCAAAAGGTGGATCAATCCCAATGCACACACACCCTGGAGCTACTGAACTTTTGATACTGGCGGAAGGTCAAATCACTGCTGGTTTTATGACACCATTTCATCTTTATTCGAAGACATTGAAACCAGGAGATGTTATGGTTTTCCCACAAGGACAACTGCATTTTCAAGTGAATTCTGGAAACGATAAAGCCACTGCTTATCTGGCTTTCAGTAGTGCAAACCCTGGAGCACAACTTCTTGACCTTTTGTTGTTTGGTACCAGCTTACCTTCTGACGTGATTGCACAAACTACCTTCCTTGATGTAGAACAAGTGAACAAGCTTAAGGCTCGTTTTGGTGGCATAGGAATTGCTGATTCCTAA 642 0.4346 MKKITQILFLFSLLSFTTYAAVNDFCVADLKGPDTPSGYQCKPPNTVTADDFVFSGLVAGNTTNTFNAALTSAFVTDFPGLNGLGVSAARLDIAKGGSIPMHTHPGATELLILAEGQITAGFMTPFHLYSKTLKPGDVMVFPQGQLHFQVNSGNDKATAYLAFSSANPGAQLLDLLLFGTSLPSDVIAQTTFLDVEQVNKLKARFGGIGIADS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00358 213 Gene3D Jelly Rolls 19 208 IPR014710 -
Vian9g00358 213 CDD cupin_OxOx 20 205 IPR001929 GO:0030145
Vian9g00358 213 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Vian9g00358 213 SMART Cupin_1_3 55 199 IPR006045 -
Vian9g00358 213 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Vian9g00358 213 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Vian9g00358 213 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Vian9g00358 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 18 203 - -
Vian9g00358 213 SUPERFAMILY RmlC-like cupins 24 206 IPR011051 -
Vian9g00358 213 FunFam Auxin-binding protein ABP19a 19 208 - -
Vian9g00358 213 Pfam Cupin 59 198 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00358 Vian-Chr9 3388782 3389423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00358 1 207 Miscellaneous Gene Families AT5G20630 55.502 4.17e-78 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00358 - - gmx:100527498 360.533