Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00295 ATGTTTGGTCTGTTCGACAAGAGCCAGAAGATAAAGGGCACTGTGGTGCTGATGCCAAAGAATGTGTTGGATGCTAACGATTTAAACGCAGTGCAGAACGGAGGTCTTGGTGGTGTTGTCTCTGGTTTATTCGGCGCCGTGAGCGACGTAGCAGGACAAGTAGTTGATTCTACAACTGCCATCTTATCCCGTAATGTCTCCTTTAAGTTGATCAGTGCTACCTCCACTGATGCAAATGGAAACGGGAAAGTTGGCAAGGAAACGTATCTAGAGAAGCATCTTCCAACGTTACCAACATTTGGGGACAGACGAGATGCATTCGCTGTTAACTTTGAATGGGATGCTAATTTTGGAATTCCGGGAGCGTTTTACATCAGAAACTTTATGTATGATGAGTTCTTCCTCGTCAGTGTCACTCTTGATGACATTCCGAATCACGGAAGCATTCAGTTTGTCTGCAACTCGTGGATCTACAACTTCAAAAGCTACAAGAAGGATCATCCTAAAACTGAGAAACTTGCAGCCGAGTTTTATATACCAAGAGATGAAAAATTCGGTCATCTGAAGTCCTCAGATTTCCTCACATATAGTTTAAAATCCTTGTCTCAGACACTCTTACCTTCACTCGAAAACGTTGTAGACTCAGATTTCACATGGAACGAGTTTGATAGCTTTCAAGAAGTGCGTGATTTGTATGAAGGTGGAATTAGTCTACCAACAGGTGTACTCAGTGCCATTAGTCCCTTACCAGTATTCAAAGAACTTTTCCGATCTGATGGTGAAAATGTCCTTCAGCTTCCACCACCTCATGTTATCAGAGTGAATAAATCTGCATGGATGACTGACGAGGAATTTGCAAGGGAAATGATTGCTGGTGTAAACCCAAATGTCATTCGTTGCCTTCAAGAGTTCCCTCCAAAGAGCAAGCTAGATCCCACTCTCTATGGTGATCAAACTAGCACTGCACTTGCTGCTAAGAGATTGTTCATATTAGATTACCAAGATGCATTCATTCCTTATTTGACGAGGATAAACAGTTTACCTACTGCAAAAGCTTATGCCACAAGAACGATCCTGTTCTTGAAAGATGATGGCACTTTGAAGCCACTTGCTATCGAATTAAGCAAGCCACATCCAAGTGGAGATAATTTGGGTCCTGTGAGCAAAGTTGTGTTACCTGCGATTGATGGTGTTGACAGCACAATTTGGCTATTGGCCAAGGCTTATGTAATTGTAAATGACTCTGGTTATCATCAGCTCGTGAGTCATTGGTTAAATACTCATGCAGTGATGGAGCCATTTGCAATAGCAACAAACAGGAATCTCAGTGTGATTCACCCCATTTATAAGCTTCTTTATCCTCACTATCGTGATACCATAAATATCAATGCACTTGCTAGACAAAACCTGATTAATGCAAATGGCATTATAGAACAATCATTTTTGCCTGGAAAGTATTCTATGGAGATGTCTTCAGTTGTTTACAAGAATTGGGTTTTCACTGAACAATCATTGCCAGCCGATCTCATCAAGAGAGGATTGGCTACTGAAGATCCTTCTGCTCCGCATGGTCTTCGACTTGTGATAAAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGATATGGGTTGAAGAGTACGTGTCCTTGTATTACCCTACAGATGTGGCAGTTCAACAAGATACTGAACTTCAAGCATGGTGGAAGGAAGCTGTAGAGAAGGGTCATGCAGACTTAAAAGATAAACAATGGTGGCCGAAAATGAAGACACGTCAAGAGCTTATTCAATCATGTTCTACTATCATTTGGACTGCTTCAGCTCTTCATGCAGCTGTTAATTTTGGACAATATCCTTATGGAGGTTTTATCCTGAACCGTCCAACTCTGAGCAGAAGATTCATCCCTGAACCAGGAACCAAAGAATATGATGAGATGCTGAAGAGTCCTCACACTGCATATTTGAGAACCATTACACCTAAGCGTGAGGCCATTATTGATCTGACAGTGATAGAAATATTGTCAAGGCATGCTTCTGATGAGATCTACCTTGGGAAGAGAGATCATCCAAATTGGACCTCTGATTCTAAGGCATTGGAAGCGTTCAAAAAGTTTGGAAGCAAGTTGACAGAGATTGAAGCAAAAATCACAGCAAGGAACAGTGATTCAGCCATGAAAAACCGATGTGGACCAGTTGAACTTCCATACACATTGCTCATTCCTTCGAGCCAGGAAGGATTGACTTTCAGAGGAATCCCTAACAGCATCTCTATCTAG 2289 0.4172 MFGLFDKSQKIKGTVVLMPKNVLDANDLNAVQNGGLGGVVSGLFGAVSDVAGQVVDSTTAILSRNVSFKLISATSTDANGNGKVGKETYLEKHLPTLPTFGDRRDAFAVNFEWDANFGIPGAFYIRNFMYDEFFLVSVTLDDIPNHGSIQFVCNSWIYNFKSYKKDHPKTEKLAAEFYIPRDEKFGHLKSSDFLTYSLKSLSQTLLPSLENVVDSDFTWNEFDSFQEVRDLYEGGISLPTGVLSAISPLPVFKELFRSDGENVLQLPPPHVIRVNKSAWMTDEEFAREMIAGVNPNVIRCLQEFPPKSKLDPTLYGDQTSTALAAKRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPSGDNLGPVSKVVLPAIDGVDSTIWLLAKAYVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRNLSVIHPIYKLLYPHYRDTININALARQNLINANGIIEQSFLPGKYSMEMSSVVYKNWVFTEQSLPADLIKRGLATEDPSAPHGLRLVIKDYPYAVDGLEIWDAIKIWVEEYVSLYYPTDVAVQQDTELQAWWKEAVEKGHADLKDKQWWPKMKTRQELIQSCSTIIWTASALHAAVNFGQYPYGGFILNRPTLSRRFIPEPGTKEYDEMLKSPHTAYLRTITPKREAIIDLTVIEILSRHASDEIYLGKRDHPNWTSDSKALEAFKKFGSKLTEIEAKITARNSDSAMKNRCGPVELPYTLLIPSSQEGLTFRGIPNSISI 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00295 762 Gene3D - 396 761 - -
Vian9g00295 762 SMART LH2_4 9 172 IPR001024 GO:0005515
Vian9g00295 762 PANTHER LIPOXYGENASE 168 762 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vian9g00295 762 Gene3D PLAT/LH2 domain 1 167 - -
Vian9g00295 762 Gene3D - 278 395 - -
Vian9g00295 762 FunFam Lipoxygenase 397 761 - -
Vian9g00295 762 Pfam PLAT/LH2 domain 75 165 IPR001024 GO:0005515
Vian9g00295 762 Gene3D - 189 277 IPR027433 -
Vian9g00295 762 ProSitePatterns Lipoxygenases iron-binding region signature 2. 445 455 IPR020834 GO:0016702|GO:0046872
Vian9g00295 762 Pfam Lipoxygenase 166 745 IPR013819 GO:0016702|GO:0046872
Vian9g00295 762 SUPERFAMILY Lipoxigenase 160 762 IPR036226 -
Vian9g00295 762 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 133 762 IPR013819 GO:0016702|GO:0046872
Vian9g00295 762 ProSitePatterns Lipoxygenases iron-binding region signature 1. 418 432 IPR020833 GO:0016702|GO:0046872
Vian9g00295 762 ProSiteProfiles PLAT domain profile. 43 171 IPR001024 GO:0005515
Vian9g00295 762 PRINTS Lipoxygenase signature 418 435 IPR013819 GO:0016702|GO:0046872
Vian9g00295 762 PRINTS Lipoxygenase signature 438 458 IPR013819 GO:0016702|GO:0046872
Vian9g00295 762 PRINTS Lipoxygenase signature 400 417 IPR013819 GO:0016702|GO:0046872
Vian9g00295 762 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 166 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00295 Vian-Chr9 2663345 2667701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00295 161 762 Acyl Lipid Metabolism Gene Families AT3G22400 57.120 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00295 K15718 - gmx:100781402 1045.8