Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00272 ATGACAATGCCTACTATGTGTTTGTTAATTCTCTTTTCTGTCATTTATGGCAGTGTAGCTACTCATCATTTTAGCAGAAATCTTCAGACTCTGTCTTCTGATTCCAATGATCAACCTTACAGAACTGCTTACCACTTCCAACCTCCCAAGAATTGGATAAATGATCCCAATGGACCAATGAGATATGGAGGACTTTACCATCTGTTCTATCAATACAATCCAAAAGGTGCAGTTTGGGGAAATATTGTGTGGGGACATTCAGTGTCAAAGGATCTTGTGAACTGGACCACACTAGATCCTGCCATCTTCCCATCTCAGCCGTCTGATATAAATGGTTGTTGGTCAGGATCAACCACACTGCTTCCTGGGAACAAACCAACCATTTTGTACACAGGAATTAACTCTATGAATAAACAAGTTCAAAACTTGGCCAAGCCCAAAAATTTGTCTGACCCTTTTCTTAGGGAATGGGTTAAGTTCCCCCAAAACCCTGTAATGGCACCAACTAGTGATAACAATATAGTTCCAGACTCATTTAGGGATCCCACCACTGCTTGGCTAGGACAAGATGGACACTGGAGAGTACTTGTTGGAAGCAGAAGAAGAACTAGGGGAATGGCACTGTTGTATAGGAGCAAAGACTTTGTTAATTGGGTTCAAGCCAAGCACCCTTTTTATTCAACCAAAGACAGTGGAATGTGGGAGTGCCCAGATTTTTTTCCAGTTTTGAAGAATGGTCAATTGGGTGTTGAGACATCTGTGAATGGTGATGATGTTAGGCATGTACTCAAGGCTAGCTTGAAAGGACATGATGATTATATTATAGGGAATTACAATACTTCCAAGGATGTGTTTGTCCCTGATAAAGGGTTTGATGAATTTGTTTTAAGATTTGATTATGGAAAATACTATGCCTCAAAATCTTTCTTTGATGATGGAAAGAAGAGAAGGGTTTTGCTTGGGTGGGTGGACGAATCATCAAGTGAGGCAGATGATATCAAGAAAGGATGGTCTTCCTTAAATAAAGACAATGATTTGACCACTTATGGAGCTTTTGTTGACGTGGAACCTCTTCATGAACAGCTTTCATTGAGAACACTGACTGATCATTCTGTCGTAGAGAGTTTTGGAGGAGAGGGAAGAGCTTGTATCACAGCCAGAGTTTACCCCACATTGGCGATCAATGATAAAGCACAACTATATGCTTTCAATAATGGCACTGCTGATGTTAATATTACAAGACTGAATGCTTGGAGCATGAAGAAAGCACAAATAAATTGA 1281 0.402 MTMPTMCLLILFSVIYGSVATHHFSRNLQTLSSDSNDQPYRTAYHFQPPKNWINDPNGPMRYGGLYHLFYQYNPKGAVWGNIVWGHSVSKDLVNWTTLDPAIFPSQPSDINGCWSGSTTLLPGNKPTILYTGINSMNKQVQNLAKPKNLSDPFLREWVKFPQNPVMAPTSDNNIVPDSFRDPTTAWLGQDGHWRVLVGSRRRTRGMALLYRSKDFVNWVQAKHPFYSTKDSGMWECPDFFPVLKNGQLGVETSVNGDDVRHVLKASLKGHDDYIIGNYNTSKDVFVPDKGFDEFVLRFDYGKYYASKSFFDDGKKRRVLLGWVDESSSEADDIKKGWSSLNKDNDLTTYGAFVDVEPLHEQLSLRTLTDHSVVESFGGEGRACITARVYPTLAINDKAQLYAFNNGTADVNITRLNAWSMKKAQIN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00272 426 CDD GH32_Fruct1-like 51 340 - -
Vian9g00272 426 SUPERFAMILY Arabinanase/levansucrase/invertase 39 339 IPR023296 -
Vian9g00272 426 ProSitePatterns Glycosyl hydrolases family 32 active site. 45 58 IPR018053 GO:0004553|GO:0005975
Vian9g00272 426 Gene3D Glycosyl hydrolase domain; family 43 18 342 IPR023296 -
Vian9g00272 426 SMART glyco_32 45 380 IPR001362 GO:0004553|GO:0005975
Vian9g00272 426 SUPERFAMILY Concanavalin A-like lectins/glucanases 334 422 IPR013320 -
Vian9g00272 426 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 15 341 - -
Vian9g00272 426 Pfam Glycosyl hydrolases family 32 C terminal 344 419 IPR013189 -
Vian9g00272 426 Pfam Glycosyl hydrolases family 32 N-terminal domain 45 340 IPR013148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00272 Vian-Chr9 2457006 2461051 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00272 338 423 Glycoside Hydrolase AT3G13784 59.302 1.08e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00272 K01193 - gmx:100777339 593.964