Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00257 ATGAGCTTCAACAAGCTCATTGTGTGGAATGTGCCTCTGCTCTTGGTGGTGGTGTTTGCATGGTCACTGATCGGTCATGCTTCGGCTTCTGTGTCCTATGACCATAAAGCTATCACCATCAATGGACAAAGAAGGATACTGCTTTCTGGTTCCATTCACTACCCCAGAAGCACACCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAGGAAGGAGGTTTGGATGTGATTCAAACTTATGTTTTCTGGAATGGGCATGAGCCTTCACCCGGCAAATATTACTTTGGGGGAAACTATGATCTGGTGAGGTTCATAAAGCTGGTGCAGCAAGCAGGCCTTTATGTTAACCTCAGAATTGGTCCTTATGTTTGTGCTGAATGGAACTTCGGAGGTTTCCCTGTTTGGCTCAAGTACATTCCAGGTATCAGCTTCAGGACAGACAATGGACCGTTTAAGTTTCAAATGGAAAGATTTACCAGGAAGATTGTGGATATGATGAAAGCAGAAAGGTTATTTGAGTCTCAGGGTGGTCCAATAATTCTATCTCAGATCGAAAATGAATATGGACCTATGGAGTATGAAGTTGGTGCTCCCGGTAGAGCCTACACACAATGGGCAGCTCATATGGCTGTAGGACTTGGCACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCGGATCCTGTTATTAACACTTGCAATGGCTTTTATTGTGATTATTTTTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACAGAGGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTGCAGTTCCTGAAAGACCTGCTGAGGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATATGTCAACTATTATATGTATCACGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCTACGAGCTATGATTATGATGCACCTCTTGATGAATATGGATTGGCGAGACAGCCAAAGTGGGGTCATCTGAAAGATTTACATAGAGCAATAAAACTGTGTGAACCTGCTTTAATATCAGGAGATCCTACTGTACAACGGCTTGGGAACTATGAAGAGGCTCATGTCTTTAGATCAAGGTCTGGAGCTTGTGCTGCATTCCTTGCAAACTACAATCCGCAATCTTATGCAACAGTGGCATTTGGAAATCAACATTACAATCTGCCTCCTTGGTCTATAAGCATTCTTCCTAACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGCACAACAATGAAGATGAGTCGTGTTCCTATTCATGGAGGACTATCTTGGAAAGCGTTTAACGAAGAGACAACCACTACTGATGATAGTTCCTTCACGGTGACTGGCCTGTTGGAGCAGATAAATGCAACCAGAGATTTGTCTGACTACCTGTGGTACTCCACGGATGTTGTGATCAATCCCAATGAAGAATTTTTGAGGAATGGAAAATATCCTTATCTTACAGTTTTTTCTGCTGGGCATGCTTTGCATGTTTTTATCAACAATCAGTTGGCAGGAACTGCATATGGAAGCTTAGAGGCCCCCAAACTAACCTTTAGTGAAAGTGTGAGGCTCAGAGCTGGTGTTAACAAAATCTCCCTTTTAAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTTGGCCCAATAACATTAAGTGGTCTCAATGAGGGGAGAAGAGACTTAACTTGGCAAAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAATCTACATTCTCTTAGTGGAAGCTCCTCTGTTGAGTGGCTTCAGGGGTATTTAGTTTCTAGAAGACAGCCATTGACATGGTACAAAACTACCTTTGATGCCCCAGTTGGAGTTGCACCATTGGCTTTAGACATGGCCAGTATGGGCAAAGGTCAAGTGTGGATAAATGGACAGAGTCTGGGCCGCTACTGGCCTGCTTACAAAGCATCTGGTTCTTGTGGTTACTGTAACTATGCAGGGACTTACAATGAGAAAAAATGTGGAAGTAAATGTGGCGAGCCTTCTCAAAGATGGTACCATGTTCCTCATTCTTGGCTGAAGCCAACCGGAAATTTACTGGTTGTGTTTGAGGAATTGGGTGGGGATCCGAATGGGATCTTTTTGGTTAGAAGGGATATTGACAGTGTATGCGCTGATATCTATGAGTGGCAGCCAAATCTTGTTAGTTATGAAATGCAAGCTTCTGGCAAAGTCAAAAGTCCTGTGAGGCCAAAAGCACATTTGTCATGTGGTCCTGGACAAAAAATCTCATCAATCAAGTTTGCTAGCTTTGGCACTCCAGTAGGATCTTGTGGAAGCTACCGTGAAGGAAGTTGTCATGCTCACAAGTCATATGATGCTTTCCAGAAGAATTGTGTTGGGCAAAGCTGGTGTACAGTGACAGTGTCTCCTGAAATTTTTGGAGGAGATCCATGTCCAAGTGTGATGAAGAAGCTCTCAGTGGAAGCTGTTTGCACCTGA 2535 0.4375 MSFNKLIVWNVPLLLVVVFAWSLIGHASASVSYDHKAITINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFGGNYDLVRFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMERFTRKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEVGAPGRAYTQWAAHMAVGLGTGVPWIMCKQDDAPDPVINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGAVPERPAEDLAFSIARFIQKGGSYVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLARQPKWGHLKDLHRAIKLCEPALISGDPTVQRLGNYEEAHVFRSRSGACAAFLANYNPQSYATVAFGNQHYNLPPWSISILPNCKHTVYNTARVGSQSTTMKMSRVPIHGGLSWKAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINPNEEFLRNGKYPYLTVFSAGHALHVFINNQLAGTAYGSLEAPKLTFSESVRLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPITLSGLNEGRRDLTWQKWSYKVGLKGEALNLHSLSGSSSVEWLQGYLVSRRQPLTWYKTTFDAPVGVAPLALDMASMGKGQVWINGQSLGRYWPAYKASGSCGYCNYAGTYNEKKCGSKCGEPSQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYEMQASGKVKSPVRPKAHLSCGPGQKISSIKFASFGTPVGSCGSYREGSCHAHKSYDAFQKNCVGQSWCTVTVSPEIFGGDPCPSVMKKLSVEAVCT 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00257 844 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Vian9g00257 844 Gene3D - 600 735 - -
Vian9g00257 844 Pfam Beta-sandwich domain in beta galactosidase 350 421 IPR041392 -
Vian9g00257 844 FunFam Beta-galactosidase 26 346 - -
Vian9g00257 844 SUPERFAMILY Galactose-binding domain-like 585 748 IPR008979 -
Vian9g00257 844 ProSiteProfiles SUEL-type lectin domain profile. 758 844 IPR000922 GO:0030246
Vian9g00257 844 FunFam Beta-galactosidase 594 735 - -
Vian9g00257 844 SUPERFAMILY Galactose-binding domain-like 405 576 IPR008979 -
Vian9g00257 844 PANTHER BETA-GALACTOSIDASE RELATED 21 745 IPR001944 GO:0004553|GO:0005975
Vian9g00257 844 Gene3D - 754 844 IPR043159 -
Vian9g00257 844 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Vian9g00257 844 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Vian9g00257 844 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Vian9g00257 844 PRINTS Glycosyl hydrolase family 35 signature 621 635 IPR001944 GO:0004553|GO:0005975
Vian9g00257 844 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Vian9g00257 844 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Vian9g00257 844 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Vian9g00257 844 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Vian9g00257 844 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Vian9g00257 844 Gene3D Glycosidases 25 346 - -
Vian9g00257 844 SUPERFAMILY (Trans)glycosidases 30 347 IPR017853 -
Vian9g00257 844 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Vian9g00257 844 FunFam Beta-galactosidase 295 423 - -
Vian9g00257 844 Pfam Galactose binding lectin domain 766 843 IPR000922 GO:0030246
Vian9g00257 844 FunFam Beta-galactosidase 754 844 - -
Vian9g00257 844 CDD Gal_Rha_Lectin_BGal 758 843 - -
Vian9g00257 844 FunFam Beta-galactosidase 449 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00257 Vian-Chr9 2307372 2313062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00257 23 843 Glycoside Hydrolase AT3G13750 80.268 0.0 1414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00257 - - gmx:100785688 1712.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00257 9 2307372 2313062 Vian9g00257 9 2307372 2313062 ECH
Vian11g00231 11 2255898 2261266 Vian9g00257 9 2307372 2313062 PCT