LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian9g00253	ATGGAGTTTTCCCAGACTGGTGTATCGCTGAGATCGAGCTTGACGTTTGGAGAGACGCTGTGTGCGGTGTTCATTCCGCTCATAGGACTTGTTGAAGCTTTGGTTTTCAGCTTAGCTGGTTGCTTCGATTTCCATTCTCCGGCGAAGAAGAGGAAACCCTCTTCTACTACCTTCGACAACATTTTAGCCCTCGCCAAGGACTCTCCGTTTACTGTTAATGAAATTGAGGCTTTACATGAGTTGTTCAAGAAGTTGAGTAGCTCAATCATTGACGATGGCCTCATCCACAAGGAAGAACTCACATTGGCCCTGTTGAAGACCACAACTAAGGAGAATCTTTTCCTTGACAGGGTTTTCGATGTTTTCGATGAAAAAAGAAATGGTGTTATAGAATTTGATGAGTTTGTGCATGCTCTCAATATCTTTCATCCTTGTACTCCTCTGGAAAAGAAAATTGACTTTTCTTTTAAAATGTATGACTTGAGACAGACTGGATATATTGAGCGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTTTGTCAGAATGTGGCATGGATATGAAAGACGAAGCCCTTGATTCCATTATTGATAAGACATTTGAAGAAGCCGATACTGATAAAGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCACTCGACACCCAACACTCTTGAAGCACATGACTCTTCCTCATCTGGCGGACATCAGCACACTGTTTACCAGTTTCATTTTCAACACCGAAGTTGATGATTCTCACTGGCACATTAATGGCAATCGCTAA	789	0.4144	MEFSQTGVSLRSSLTFGETLCAVFIPLIGLVEALVFSLAGCFDFHSPAKKRKPSSTTFDNILALAKDSPFTVNEIEALHELFKKLSSSIIDDGLIHKEELTLALLKTTTKENLFLDRVFDVFDEKRNGVIEFDEFVHALNIFHPCTPLEKKIDFSFKMYDLRQTGYIEREEVRQMVVAILSECGMDMKDEALDSIIDKTFEEADTDKDDKISKEEWKAFVTRHPTLLKHMTLPHLADISTLFTSFIFNTEVDDSHWHINGNR	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian9g00253	262	PRINTS	Recoverin family signature	165	183	-	-
	Vian9g00253	262	PRINTS	Recoverin family signature	118	139	-	-
	Vian9g00253	262	PRINTS	Recoverin family signature	211	231	-	-
	Vian9g00253	262	SUPERFAMILY	EF-hand	64	243	IPR011992	-
	Vian9g00253	262	ProSiteProfiles	EF-hand calcium-binding domain profile.	110	145	IPR002048	GO:0005509
	Vian9g00253	262	ProSiteProfiles	EF-hand calcium-binding domain profile.	191	226	IPR002048	GO:0005509
	Vian9g00253	262	Pfam	EF-hand domain pair	92	138	IPR002048	GO:0005509
	Vian9g00253	262	CDD	EFh	151	221	IPR002048	GO:0005509
	Vian9g00253	262	SMART	efh_1	114	142	IPR002048	GO:0005509
	Vian9g00253	262	SMART	efh_1	195	223	IPR002048	GO:0005509
	Vian9g00253	262	SMART	efh_1	151	179	IPR002048	GO:0005509
	Vian9g00253	262	Pfam	EF-hand domain pair	150	219	IPR002048	GO:0005509
	Vian9g00253	262	Gene3D	-	62	254	-	-
	Vian9g00253	262	PANTHER	CALCINEURIN B	40	254	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Vian9g00253	262	FunFam	calcineurin B-like protein 3	60	253	-	-
	Vian9g00253	262	ProSiteProfiles	EF-hand calcium-binding domain profile.	147	182	IPR002048	GO:0005509
	Vian9g00253	262	ProSitePatterns	EF-hand calcium-binding domain.	204	216	IPR018247	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian9g00253	Vian-Chr9	2269652	2272480	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian9g00253	31	254	EF-hand Containing Proteins	AT5G55990	57.143	2.90e-87	257

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian9g00253	K06268		-	gmx:100801943	440.269