Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00252 ATGGCTCAGCCGCCGTTCGATCCGTACTACCTGTACCAACAAGATGATCGGAGCAACATCAACACGCTCTTCGTGTCGGGGCTCCCGGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCCGGCTTCGACTCTTGCCAGCTCAAGTACACCGGCCGCGCCAACCAGGTAGTGGCGTTTGCTACGTTTTTCAACCACCAATCGGCAATGGCAGCGCTGCACGCCTTGAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTACATATTGAGCTTGCCAGGTCAAACTCTAGGAGAAAGCGAAAACCAGGCGGTGGAGCCTACGTGGTTATAGATAAAAGGACCAAAGGGGAGCGTGATGTTCAGGGATCATCAAGTGATGATGGTAATGTTACTTTATTGAGTTCAAGGCAAAGTGTGTGGGACAGTGACCCTGACGAACCATCAGAGAGTGACGGCAACCATGGTGATTTATCAACCATACCAAGTGATGATGGAGCTGTTGGTTCTGGCCATGCTATACCCGTGCAACATGAAAAGGGCAGTGCCGGAGGACTGTGTTCCACTCTCTTTATCGCAAATCTTGGCCCAAACTGCACTGAAGATGAATTAAAGCAAGCCTTTTCTTCATATGCTGGATTCAACATGGTCAAAATGCGCTCTAGAGGAGGAATGCCAGTTGCATTTGCTGATTTTAAGGAACTTGATCAAGCTGTTAAAGTCGTGGAGGAGCTTCAGGGAAGCTTGCTTCCATCATCGGATCGGGGTGGCATGCACATAGAGTAA 801 0.4994 MAQPPFDPYYLYQQDDRSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRTKGERDVQGSSSDDGNVTLLSSRQSVWDSDPDEPSESDGNHGDLSTIPSDDGAVGSGHAIPVQHEKGSAGGLCSTLFIANLGPNCTEDELKQAFSSYAGFNMVKMRSRGGMPVAFADFKELDQAVKVVEELQGSLLPSSDRGGMHIE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00252 266 MobiDBLite consensus disorder prediction 101 181 - -
Vian9g00252 266 SUPERFAMILY RNA-binding domain, RBD 21 255 IPR035979 GO:0003676
Vian9g00252 266 Gene3D - 16 103 IPR012677 -
Vian9g00252 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Vian9g00252 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 266 IPR000504 GO:0003723
Vian9g00252 266 MobiDBLite consensus disorder prediction 129 147 - -
Vian9g00252 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 256 IPR000504 GO:0003723
Vian9g00252 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Vian9g00252 266 SMART rrm1_1 194 266 IPR000504 GO:0003723
Vian9g00252 266 SMART rrm1_1 22 93 IPR000504 GO:0003723
Vian9g00252 266 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 150 266 - -
Vian9g00252 266 Gene3D - 183 266 IPR012677 -
Vian9g00252 266 FunFam RNA-binding protein with multiple splicing 2 18 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00252 Vian-Chr9 2254228 2257022 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00252 - - gmx:100783764 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00252 9 2254228 2257022 Vian9g00252 9 2254228 2257022 ECH