Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00239 ATGAACGGCGGTGATGAGGTCGTGGCAGCTCCGGCGGGTCCACCGCAGCCGCTGGAGTGGAAATTCTCTCAGGTTTTCGGGGAACGTACGGCGGGGGAGGAAGTTCAGGAAGTGGACATTATTTCTGCTATTGAGTTTGACAAGTCTGGTGATCATCTTGCTACCGGTGACCGTGGTGGTCGAGTAGTTCTCTTTGAGAGAACAGATACAAAAGATCATCGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAACCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGTCAAACCGCCAACGGTGCCTTATTCCTTCTATCTACAAATGATAAAACCATCAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGACATGAACGTTGATCCTAAAGCAATGGGAAATGGCTCTATTGCGAGTTCAAGTAGTTCCAGTAGCTCTAAATCATTTCTTGCAAATGGAGTATCTCCAGATGGACCATACAATTATTTAAGCAACGATTTCTCATTTCCGCCAGGAGGAATACCTTCACTAAGATTACCACTGGTAGTAACCAGCCATGAGACGAGTTTGATGGCTCGATGCCGAAGAGTATATGCCCACGCACATGATTATCATATTAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTACGAATAAATCTTTGGAACTTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCTATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGATCCCGATCATTTTTCACAGAGATTATTGCTTCTATCTCGGACATAAAATTTGGAAAGGATGGAAGATATATACTTAGTCGTGATTACATGACCCTAAAGTTATGGGACATCAATATGGATTCTGGCCCAGTTGCTACATTCCAGGTTCATGAGTATTTAAGGCCAAAGCTCTGTGATTTATATGAAAATGATTCAATTTTTGATAAGTTTGAGTGTTGTCTAAGTGGTGATGGATTGCGAGTTTCAACTGGCTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACCGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGTCAAGTTCCAACCCCATCAAGGCCTTCTAGATCACTGGGAAACAGTATAACAAGAGTTGTAAGACGTGGAGCCGAAAGCACTGGAGTTGATGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCCTGA 1548 0.4109 MNGGDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHRGSRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISDMNVDPKAMGNGSIASSSSSSSSKSFLANGVSPDGPYNYLSNDFSFPPGGIPSLRLPLVVTSHETSLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCVPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAESTGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00239 515 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 232 246 IPR018067 -
Vian9g00239 515 Gene3D - 77 513 IPR015943 GO:0005515
Vian9g00239 515 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 515 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 MobiDBLite consensus disorder prediction 443 462 - -
Vian9g00239 515 SMART WD40_4 105 145 IPR001680 GO:0005515
Vian9g00239 515 SMART WD40_4 273 313 IPR001680 GO:0005515
Vian9g00239 515 SMART WD40_4 223 262 IPR001680 GO:0005515
Vian9g00239 515 SMART WD40_4 332 370 IPR001680 GO:0005515
Vian9g00239 515 SMART WD40_4 31 66 IPR001680 GO:0005515
Vian9g00239 515 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 208 511 - -
Vian9g00239 515 Pfam WD domain, G-beta repeat 226 262 IPR001680 GO:0005515
Vian9g00239 515 MobiDBLite consensus disorder prediction 165 182 - -
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 290 318 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 401 427 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 262 289 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 319 346 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 234 261 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 375 400 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 347 374 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 484 513 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 MobiDBLite consensus disorder prediction 162 182 - -
Vian9g00239 515 PIRSF PPA2_B55 11 515 IPR000009 GO:0000159|GO:0019888
Vian9g00239 515 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 196 - -
Vian9g00239 515 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Vian9g00239 515 SUPERFAMILY WD40 repeat-like 39 507 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00239 Vian-Chr9 1998626 2006391 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00239 K04354 - gmx:100789058 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00239 9 1998626 2006391 Vian11g00221 11 2166480 2174198 ECH
Vian9g00239 9 1998626 2006391 Vian9g00239 9 1998626 2006391 ECH
Vian11g00221 11 2166480 2174198 Vian9g00239 9 1998626 2006391 PCT