Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00220 ATGCGAAACATTGAAGTTCGTCGATTTTGCACTCTGATAACCGAAGCAACCCACAGAACCCCAACAACGAAGCCATTCCTTCCCATACCTCACCGAACCCTTCCCGAACCTCGAGGCCAGGATCTGGACTTCATCACCGTCGCTCACAGTCACGTCGTCAACTCCCACTGGGAAAAGCTACATCCTTTGTGCCCCGTTCTCACACCCTTTCGTCTCAAACACCTCTTCCTCAACCTCCAAAACGACCACGTATTGTCCCTCAAACTTTCCCAATGGCTTCTCCAACACCACCCATCCACGCACACCCTCGAAACCCTCTCGTTCCTCCTCCACACCCTCGCCACACATCGCCAATTCAAAACCATCCAAACCATCCTCACAAAAATCCTTTCTTCACACCCTCCCCACACCCTCTTCGACTCTCTCTTACACTCCTACCCTATCTGCAATGCTTCCCCTCTCGTCTTCGATGCCCTCTTCAAAACCCTCGCCCATGCCAGTAAATTCCGCAGCGCCACCCTCACTTATACCCTGATGAAGCAACACGGCTTCTCCCTCACCGTTGAGTCCTGCAACGCCTTTTTAAGTTCTCTGCTTCGCCTCCGCAGAGCAGATATCGCGCTGTCGTTTTACCGGGAGATGCGTCGCTCTTATGTTTCGCCTAACGTCTACACTCTCAACATGGTTATTCGCGCTCATTGCATGTTGGGGGGAGTGCAGAAGGGCTTTGAGATTTTCCAGAAGATGGGGGACATGGGCTTGAGTCCTAATGTTGTGTCTTTCAATACTTTGATTTCGGGGTATTGTAACAAGGGGCTGTTTGGCTTGGCTTTAAAGGTTAAATCTTTGATGGGGGGTCATGGAGTGCAGGCTAATGTGGTTACTTTTAACACTCTGATTAATGGGTTTTGTAAGGAGAGGAAGTTGCATGAGGCGAATAGGGTTTTCAATGAGATGAAGGTTGCCAATGTAACCCCGAATGTTGTAACTTACAATACTTTGTTGCATGGGTATGGTCAGGTTGGAGACAGTGAAATGGGTGGGAAAGTTTACGAGGAGATGGTGAGGAATGGGGTTAAGGCTGATATATTAACTTATAATGCATTGATTTTGGGGCTGTGTAAGGATGGAAAGACAAAGAAGGCTGCAGGGTTTGTAAAGGAGCTTGATAAAGAGAACTTGGTTCCAAATGCGAGTACTTTTTCTGCTCTTATTACTGGACAGTGTGTGAGGAACAATTCTGAGCGTGCCTTTCTTATTTATAGGAGCATGGTGAGGAGTGGTTGTAATCCAAATGAGCATACTTTTCAGATGCTGATATCTGCTTTTTGCAAGAATGAGGACTTTGATGGGGCTGTGCAGGTTTTGAGGGACATGCTGGGTAGATTGATGAGGCCAGATTCCAGCACGTTATCTGAGCTGTATCATGGACTTCACAGGTGTGGGAAAAACCAGTTGGCATTGGCTCTGTGTAGCGAGATAGAAGCGAGGCGACTCTTGCCGGATGGGTTTGACAAAGAAAAATTATTCATCGTCCCTCCTGAAAATGAGACAAGTAGCTGA 1563 0.4766 MRNIEVRRFCTLITEATHRTPTTKPFLPIPHRTLPEPRGQDLDFITVAHSHVVNSHWEKLHPLCPVLTPFRLKHLFLNLQNDHVLSLKLSQWLLQHHPSTHTLETLSFLLHTLATHRQFKTIQTILTKILSSHPPHTLFDSLLHSYPICNASPLVFDALFKTLAHASKFRSATLTYTLMKQHGFSLTVESCNAFLSSLLRLRRADIALSFYREMRRSYVSPNVYTLNMVIRAHCMLGGVQKGFEIFQKMGDMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMGGHGVQANVVTFNTLINGFCKERKLHEANRVFNEMKVANVTPNVVTYNTLLHGYGQVGDSEMGGKVYEEMVRNGVKADILTYNALILGLCKDGKTKKAAGFVKELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCNPNEHTFQMLISAFCKNEDFDGAVQVLRDMLGRLMRPDSSTLSELYHGLHRCGKNQLALALCSEIEARRLLPDGFDKEKLFIVPPENETSS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00220 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vian9g00220 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Vian9g00220 520 Gene3D Tetratricopeptide repeat domain 390 505 IPR011990 GO:0005515
Vian9g00220 520 NCBIfam pentatricopeptide repeat 365 398 IPR002885 -
Vian9g00220 520 NCBIfam pentatricopeptide repeat 400 433 IPR002885 -
Vian9g00220 520 NCBIfam pentatricopeptide repeat 190 222 IPR002885 -
Vian9g00220 520 NCBIfam pentatricopeptide repeat 259 292 IPR002885 -
Vian9g00220 520 NCBIfam pentatricopeptide repeat 224 258 IPR002885 -
Vian9g00220 520 NCBIfam pentatricopeptide repeat 294 328 IPR002885 -
Vian9g00220 520 NCBIfam pentatricopeptide repeat 434 462 IPR002885 -
Vian9g00220 520 NCBIfam pentatricopeptide repeat 329 362 IPR002885 -
Vian9g00220 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vian9g00220 520 Pfam PPR repeat 428 459 IPR002885 -
Vian9g00220 520 Gene3D Tetratricopeptide repeat domain 76 276 IPR011990 GO:0005515
Vian9g00220 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vian9g00220 520 Pfam PPR repeat family 292 337 IPR002885 -
Vian9g00220 520 Pfam PPR repeat family 221 270 IPR002885 -
Vian9g00220 520 Pfam PPR repeat family 362 409 IPR002885 -
Vian9g00220 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Vian9g00220 520 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 58 405 - -
Vian9g00220 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vian9g00220 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vian9g00220 520 Pfam PPR repeat 190 217 IPR002885 -
Vian9g00220 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vian9g00220 520 Gene3D Tetratricopeptide repeat domain 277 389 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00220 Vian-Chr9 1802355 1803917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00220 202 515 Glycosyltransferase AT1G05670 32.000 6.22e-47 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00220 - - gmx:100792776 807.364