Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00215 ATGTTTTCCTACTCCAAGTTTAGTTTCTCTCCTTTCCTACTTCGTAGGGCAGATGCAAGAGTAAGTGCAAACTTTAACATTGACACCCCGCAGGACCCCAATTCAACCGGCCCTCATGGCTCGAATGCTAATTTTGATGAAGAATTTCGAAAGGGAAAGGAAAGAGGGAGAGTGATGGGTGGTAATGATGGTGGTGGTGGGGTTGTTATTGGGAAGAAGAAGAAGTCGAAGGAGAAAGTTGAATGGGTTTGCTGCAATTGTGGGTACAGTGCAGGACAATGGTGGGGCGTGTGCCGTTCATGCAATGTATCTGGAACTATGAAAGAGGCCAAATTCAGTAGTGATGCTGGTACTGTGATTAGTGGGTTTTCAGTATTGGAAGATAGTGTTGGGTCTTGGCTACCGCAACAGGAAGGAGAGTTACGTCCCTTGAGATTGGCAGAGGTAAACAGGGGCATTGATCATCACCATTGGAGAATTCCTTTGTCTGGTCCCTTCGGAGATGAAGTTTGCAGAGTGCTTGGTGGTGGTCTCATACCAGGCTCCTTGACTTTAATTGGTGGTGATCCGGGTGTTGGGAAGAGTACTCTTTTGCTGCAGATAGCTTCAATCATTGCAGAAGGGCACCATGATGGTAAAGCATCTCCAGTTGTATATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCGGATCGGCTTAGGATTCAATCAGATATTTATTTATATTCAAGTAATGATGTTGAGGATATATTGAAGAAAGTTCAGCATCTCTCTCCTGGGGCTCTAATTGTTGATTCAATACAAACTGTGTATTTAAAAGGAGTAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGCACTTCAGCTTTACTCCGATTTGCAAAGAAGACAAACATCCCAGTTCTTCTGATTGGACATGTGACAAAATCTGGAGAGATTGCAGGACCTCGAGTTTTGGAGCATATTGTTGATGTTGTTATGTATATGGAAGGTGAGAAGTACTCTTCCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACGGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCTATTTCAAATGCCAGTAAAATGTTTCTCAGTGAGCAACATCTGGATTCAGAAATTTTAGCTGGACTAGCTGTTGCTGTAATCATGGATGGGTCCCGGACATTTCTTATTGAAATCCAGGCACTTTGTCTTTCTAGTTCAACTGGTTCAAGGCAAGTTAATGGTATCCAACTAAATAGAGCTGATATGATCATATCCGTTCTTATAAAGCAAGCTGGTCTTCGTCTCCGAGAACATGCTGTATTTTTGAATGTTGTTAGTGGATTGACACTGGCTGAGACTGCTGGAGATCTTGCTATAGCAGCAGCAATTTGCAGCAGTTGCTTGGAAATCCCAATTCCAAATGACATTGCATTCATTGGTGAAATTGGCCTCGGTGGTGAGCTTCGCATGGTTCATAGAATGGATAAAAGGGTATATACCGTTGCGAAATTGGGTTTCAGAATGTGCATAGTCCCCAAGGTTGCTGAGAAAGCTTTAGGAACTGAAGGTTTAGAAAAGATGAAAGTTGTTGGTTGCAGGAATCTGAAAGAGGTTATTAACACTGTATTTCCCGATATAAGGATGAAAAGGAGGTAG 1686 0.4282 MFSYSKFSFSPFLLRRADARVSANFNIDTPQDPNSTGPHGSNANFDEEFRKGKERGRVMGGNDGGGGVVIGKKKKSKEKVEWVCCNCGYSAGQWWGVCRSCNVSGTMKEAKFSSDAGTVISGFSVLEDSVGSWLPQQEGELRPLRLAEVNRGIDHHHWRIPLSGPFGDEVCRVLGGGLIPGSLTLIGGDPGVGKSTLLLQIASIIAEGHHDGKASPVVYVSGEESVEQIGNRADRLRIQSDIYLYSSNDVEDILKKVQHLSPGALIVDSIQTVYLKGVMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGEIAGPRVLEHIVDVVMYMEGEKYSSHRMLRAVKNRFGSTDELGVFEMSHSGLQAISNASKMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSSSTGSRQVNGIQLNRADMIISVLIKQAGLRLREHAVFLNVVSGLTLAETAGDLAIAAAICSSCLEIPIPNDIAFIGEIGLGGELRMVHRMDKRVYTVAKLGFRMCIVPKVAEKALGTEGLEKMKVVGCRNLKEVINTVFPDIRMKRR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00215 561 NCBIfam DNA repair protein RadA 77 548 IPR004504 GO:0003684|GO:0005524|GO:0006281
Vian9g00215 561 Gene3D - 172 377 IPR027417 -
Vian9g00215 561 FunFam DNA repair protein radA isogeny 387 557 - -
Vian9g00215 561 MobiDBLite consensus disorder prediction 25 46 - -
Vian9g00215 561 FunFam DNA repair protein RadA 163 369 - -
Vian9g00215 561 CDD RadA_SMS_N 82 371 - -
Vian9g00215 561 Gene3D - 388 560 IPR014721 -
Vian9g00215 561 PRINTS DNA repair protein radA signature 268 292 - -
Vian9g00215 561 PRINTS DNA repair protein radA signature 417 440 - -
Vian9g00215 561 PRINTS DNA repair protein radA signature 307 335 - -
Vian9g00215 561 PRINTS DNA repair protein radA signature 84 108 - -
Vian9g00215 561 PRINTS DNA repair protein radA signature 172 200 - -
Vian9g00215 561 PRINTS DNA repair protein radA signature 342 368 - -
Vian9g00215 561 Pfam AAA domain 174 316 - -
Vian9g00215 561 ProSiteProfiles RecA family profile 1. 159 312 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vian9g00215 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 363 IPR027417 -
Vian9g00215 561 SUPERFAMILY Ribosomal protein S5 domain 2-like 349 553 IPR020568 -
Vian9g00215 561 Pfam Subunit ChlI of Mg-chelatase 434 523 - -
Vian9g00215 561 PANTHER DNA REPAIR PROTEIN RADA 42 554 - -
Vian9g00215 561 SMART AAA_5 180 338 IPR003593 GO:0016887
Vian9g00215 561 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00215 Vian-Chr9 1761421 1770973 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00215 K04485 - gmx:100794165 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00215 9 1761421 1770973 Vian9g00215 9 1761421 1770973 ECH
Vian11g00205 11 1891753 1905040 Vian9g00215 9 1761421 1770973 PCT