Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00204 ATGGGGAGTTCTGAAGGGGTGGGAACATCGTCGAAGCAATATGGTATCACGAAACCCATTTCGATGGCTGGACCAACGGTTTATGATTTGCACAGAACTCTTGAGTTAGAAAAGTTTCTCGCTATTTCGGGACTTTATGAGAACAATGAGGAAGCTGCTAAGAGAGAGGAGGTTCTTTACCGACTTGGACAGATAGTAAAACATTGGGTGAAGCAACTCACTCGCCTAAAGGGATACACTGATCAAATGGTGGAAGATGCAAATGCTATCATTATGACTTTTGGTTCTTATCGCCTTGGTGTTCATGGTCCTGGGGCTGACTTAGACACAATATGCATTGGACCTTCCTACGTGAATCGCGAGGAGGATTTTTTCTACACATTGCATGATATCCTAGCCAACATGGAGGAGGTCTCTGAATTGCAACCAATTCCGGATGCTCATGTACCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGATCTCCTTTATGCCAGTATTTCTCGCTTGATTGTACCTGAAGACTTGGTTATATCTGATATCACTCTTCTACACAATGTTGACGAGCCTACTGTGCGAAGTTTAAATGGCTGCAGAGTTGCAGATCAAATTCTAAAGCTTGTTCCGAATGTTGAGCACTTTCGTACAACACTTCGTTGCTTGAAATTTTGGGCCAAAAGACGAGGCATTTATTCCAATGTGACAGGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTGTGCCAGTTGTATCCAAATGCTGTTCCAAGTATGCTTGTTTCTCGATTCTTTAGGGTATATACACAGTGGGGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAAAATCAACTTGGTTTTTCCTTTTGGCATCCTCGTAAAAATCCTCGTGATCGATCCCATCTCATGCCAATTATTACTCCTGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTACAAGCACACTTCGTGTTATGATGGAACAATTCCAATTTGGCAACAAGATATGTGGGGATGTAGAATTAAACAAAGGTTGTTGGGAGGATCTGTTTGAACCATACAGTTTTTTTGAAAGTTATACAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGTTGATGACTTACGCAATTGGAAAGGTTGGGTGGGATCACGCCTTCGGCAGTTGACCTTGATGATTGAGCGTGACACTTTTGGGAAGTTGCAGTGCCATCCCTATCATCATGAGTATATGGACACCTCAAGGCAGAGTGCACATTGTGCTTTCTTTGTGGGTTTACAGAGGAAGAAGGGAGAAGTAGTTCAAGAAGGCCAGCAATTTGATATACGAGGAACAATTGATGAATTTTTGCATGCAGTCAATATGTACATGTTCTGGAAACCAGAGATGGAGATTTTTGTTTCTCATGTTCGGAGAAGGCAAATTCCGTGCTATGTGTTTCCTGATGGTTACAAAAGATTGCGATCATCAAGGCCAACCTCAACACGTGAGAATCATAAATCATTTCCTAAAAATGAGGTTTCTGGGACTGAACATGTTGAGAGAATTCGTAAGAGGAAGAACAATGATGGGTTGGGTGTGAGGGAGGATGCAACACTGAAAAAGCAATGTAGTAGTATTCCTGAAGGTAGAGGGGCAAGTAGCAGTGCGTCTGATAGTCAACTGTTGTCAAGCAGTGAGCAAGAGTTGGGTAGAACGGAGTCTCCTGAACCTGCCTCTAATTCTAGTGGGTTTACTTCCGTTACAAGTGATAGTGGTTCTTCTGAAGATATTGGAGCCGTATCTATGGCAGGTTGTGCTGAAGATAACACCAGGGGTGTTGATATGATGACCAACAATGGCAGGTTTGAGAGTAGTACTTACGAGAACGGTTCTGGCACACTGGTGAAGAACAGATTGACAAGTTCTGAGGGAGTATTTCCACACGAGCTACAGGTGCAGTTGCAGCAAAATGCAATGTTAGGGATGGTTCTTGATTCTACAGGAAACGTTCATTCAGAGGTGGTGCAAGAACCAGTAATAAGGCATGCTCTCATGTTTAATAATAACTGTTTTTAG 2079 0.4233 MGSSEGVGTSSKQYGITKPISMAGPTVYDLHRTLELEKFLAISGLYENNEEAAKREEVLYRLGQIVKHWVKQLTRLKGYTDQMVEDANAIIMTFGSYRLGVHGPGADLDTICIGPSYVNREEDFFYTLHDILANMEEVSELQPIPDAHVPVMKFKFDGISIDLLYASISRLIVPEDLVISDITLLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWGWPTPVMLCPIEENQLGFSFWHPRKNPRDRSHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNKICGDVELNKGCWEDLFEPYSFFESYTNYLQVDVVAADVDDLRNWKGWVGSRLRQLTLMIERDTFGKLQCHPYHHEYMDTSRQSAHCAFFVGLQRKKGEVVQEGQQFDIRGTIDEFLHAVNMYMFWKPEMEIFVSHVRRRQIPCYVFPDGYKRLRSSRPTSTRENHKSFPKNEVSGTEHVERIRKRKNNDGLGVREDATLKKQCSSIPEGRGASSSASDSQLLSSSEQELGRTESPEPASNSSGFTSVTSDSGSSEDIGAVSMAGCAEDNTRGVDMMTNNGRFESSTYENGSGTLVKNRLTSSEGVFPHELQVQLQQNAMLGMVLDSTGNVHSEVVQEPVIRHALMFNNNCF 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00204 692 CDD NT_PAP_TUTase 54 209 - -
Vian9g00204 692 FunFam Poly(A) polymerase alpha, putative 47 203 - -
Vian9g00204 692 PIRSF PolyA_polymerase 3 598 IPR014492 GO:0005634|GO:0043631|GO:1990817
Vian9g00204 692 MobiDBLite consensus disorder prediction 496 537 - -
Vian9g00204 692 PANTHER POLY A POLYMERASE 9 529 - -
Vian9g00204 692 Gene3D Poly(A) polymerase predicted RNA binding domain 361 477 - -
Vian9g00204 692 MobiDBLite consensus disorder prediction 548 597 - -
Vian9g00204 692 Gene3D - 15 357 - -
Vian9g00204 692 Pfam Poly(A) polymerase predicted RNA binding domain 361 422 IPR007010 GO:0003723|GO:0043631
Vian9g00204 692 Pfam Nucleotidyltransferase domain 88 162 IPR002934 GO:0016779
Vian9g00204 692 FunFam Putative poly(A) polymerase gamma 190 357 - -
Vian9g00204 692 SUPERFAMILY Nucleotidyltransferase 14 208 IPR043519 -
Vian9g00204 692 MobiDBLite consensus disorder prediction 495 598 - -
Vian9g00204 692 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Vian9g00204 692 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Vian9g00204 692 FunFam Nuclear poly(A) polymerase 4 361 477 - -
Vian9g00204 692 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0043631|GO:1990817
Vian9g00204 692 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 360 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00204 Vian-Chr9 1668632 1672541 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00204 K14376 - gmx:100783237 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00204 9 1668632 1672541 Vian9g00204 9 1668632 1672541 ECH