Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00177 ATGACTCTCCCTTCACACGATGCTTGGATTCACACTTCCCATACCCTTCTCCCCACATGGAAATCCCTTTCTCTCTCTCATCAGTCAGCAATCCCAATTTCAATATCAAGAGTTAACCAAGTCGATGCTGCACGATTGGACGTTGAAATGTCAGCCATGTTGAAAGAGCAGTTGGTTAAAGTGTTCTCGTTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCGGAGCTTGATGCTTTCCTTGAGTTTCTTATTTGGCGGTTCTCAATTTGGGTGGATAAGCCAACCCCAGGCATTGCTCTCATGAACCTGAGGTACAGAGATGAGCGTGCAGTAGAACCAAGAGATAAAGTTAGAACTGGTTTGGAGGGACCTGGACTCACTGTTGGGCAGAAAATTTGGTATTGTGTTGCCACTGTTGGAGGTCAGTATATATGGGCTCGATTGCAGTCCTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGACCATTGGCACGACGCCTATGGATCTTGATACAACGAATAGAAGGAGTTTATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACTGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAATATATGAACAGGCAATTAGTTTGGAATGAATTCTCGGAAATGTTACTGTTGCTTCTTCCTCTTCTTAATTCATCATCCGTGAAAAATCTTCTTCGACCTTTCTCAAAAGATAAATCATCAAGTTCATCCGAGGATGGCACAGCATGTCCCATTTGCCTGGCCACTCCAACCATCCCTTATGTTGCTCTACCTTGTCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCATTTAGGTGTTCCAGGTGCAGTGAGCCAGTTGTTGCTATGCAACGGCATAGTGGTGTCTCCACGGAATGA 990 0.4394 MTLPSHDAWIHTSHTLLPTWKSLSLSHQSAIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWVDKPTPGIALMNLRYRDERAVEPRDKVRTGLEGPGLTVGQKIWYCVATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRIEGVYRAASFGNLLIFLCTGRYRNLIERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSSSSSEDGTACPICLATPTIPYVALPCQHRYCYYCLRTRCAAAPSFRCSRCSEPVVAMQRHSGVSTE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00177 329 SUPERFAMILY RING/U-box 268 319 - -
Vian9g00177 329 CDD RING-HC_PEX2 271 317 IPR045859 -
Vian9g00177 329 Pfam Pex2 / Pex12 amino terminal region 47 251 IPR006845 -
Vian9g00177 329 Pfam Zinc finger, C3HC4 type (RING finger) 273 313 IPR018957 GO:0046872
Vian9g00177 329 PANTHER PEROXISOME BIOGENESIS FACTOR 2 3 328 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Vian9g00177 329 SMART ring_2 273 313 IPR001841 -
Vian9g00177 329 ProSitePatterns Zinc finger RING-type signature. 289 298 IPR017907 -
Vian9g00177 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 327 IPR013083 -
Vian9g00177 329 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00177 K06664 - gmx:100805856 612.838