Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00157 ATGGTAGATGAAGAAGTAGCGCCAAAATTCCCAGGTTTTCCTTTCGAGCCCTATTCGATTCAGATTGATTTCATGAACAGCTTGTATGAATCTCTCAATGAGGGAGGCGTGTCTATGTTGGAAAGCCCAACTGGGACAGGGAAGACCATGAGTGTGATTTCCAGTGCCTTGCAATGGGTGCTTGATAAGAGGCTACAACAAGAAGCAGTTTGTGATGAGAATCCGGGGAGTGGTGGTGGAGTTGGTTCAGATGACGAACCTGATTGGATGAGAGACTTTGTCGTCAACAAAGTGGAGAATAATAAGAAGGAAGAAAAGTACGGGTCTGCGTGGGGAAAATCTCATAGTAGGAAAAAGAGGACGGAAATTCGTAAGGATTTTAGGGTTATGGGTGCTGGAGAGGAGAAGGGGTGTGAGAGTCCGCAAAATAAAATTGATGCAGTGGGTGTTACTGATAAGGAATTTTTATTGGAGGAATACGAGAGTGAAGATGAGAGAGGGCCAGGGAGTAATATGTCCAAGAGGAAGACTGTTAACACCTCCTTTAGTTCCTCTAGTGAAGATGAGTCTAGCGAAGAGGAAGAGGAGGAGAAGAAGTTGAAGGTTTATTTCTGTAGTAGAACTCATTCGCAGCTTTCGCAGTTCATAAAGGAGTTGCGGAGGACGGTCTTCGCTAAAGAGATGAAGGTTGTGAGTTTAGGCTCTAGGAAAAATCTTTGCATTAATGAAGAGGTAGTTGCACTTGGAAACTCTACACGCATAAATGAGCGATGTTTGGAACTTCAGAAGAAAAAGAAAAATGATGCTAAAAAAGTTAAGAACTTAAAAGTAGGTTCAGGGATACGCAGAACAAAGGCCACCTCTGGCTGCCCAATGCTTAGAAAACACAGAGTTCAACAAGAATTTAGAAATGAGGTATTTCAACAAAGACCCTTGGATATTGAAGATCTTGCAAATCTCGGAAGAACTATGGGAACTTGTCCATATTATGGGTCTAGAAGCATGGTTCGAAGAGCTGATCTTGTTGTCCTACCATATCAATCTCTTCTTTCAAAATCATCTCGTGATGCCCTCGGCCTGAATTTGAAATCCAATATTGTTATAGTAGACGAGGCTCATAATTTAGCTGATTCACTCATCAACATGTATGACTCCAAAATTACTTTATCACAGCTGGAGACTGTGCACAACCATTTGGAACGGTACTTTCTGAGATTCCGGAGTCTTTTGGGTCCTACTAATAGGAGATACATTCAAACTCTCATGGTCCTCACACAAGCATTTCTCCGAGTACTTCTTGATGATAAAGATGGAAACCTTATAGATTCTTGCCGTGATATAGATCAAGCTTCTGAAAAAAGTAGCTCCGATTTTACTATGGCCATCAATGATTTTTTATTTGAACAAAATATAGACAATATCAACTTGGTCAAATTGTTGAAATACATTAAAGAAAGTAATATCATGCACAAGGTTAGTGGTTATGGAGAAAAGTTTGCTGCCATGGCAAAGATACCAGCACACCATAACATCGAGCAACATGCCGAGGAGGGAAGCTGTCTATCTGCTTTCCAGGCCTTAGCTAACATGTTACTATCACTGACAAACAATGATGGTGATGGAAGGATAATAATTTCCAGGTTCAGGTTAACAAGCCTGAAGAAGCAAGGAGGATATCTGAAGTATGTTATGCTCAGTGGAGAGAAGATTTTTTCTGAGATTGTAGATGAAGCACATGCCGTTGTATTAGTAGGGGGAACACTTCAACCAATAGAAGAGACTAGGGAGAGACTGTTTCCATGGTTACCACCAAACCAGTTGCATTTCTTTTCATGTGGGCATATTGTTCCTCCAGATAGCATTATGCCAATTGCTGTTGCACGGGGGCCTACTGGACGCACCTTTGATTTTAGCTTCAGCTCCAGGAGCTCACCAGACATGATGAGAGAACTGGGTCTTTTGCTGTGTAATCTGGTTACTGTGGTTCCGGAAGGAATTGTTGTCTTCTTCCCATCTTTTGATTATGAAAATAGAGTCTATGAGCATTGGGAATTATCTGGCATCCTTGAAAGGATTACAAAGAGGAAGCGTGTCTTTAGGGAGCCAAGAAATAACATGGACGTTGAATCCGTTCTCAAGGAATATAAAGATACCATTTATACATTATCGGGTATGAATTCAGAAGTAAACCAAGCATCTTGTAGTGGTGCAATACTCCTTGCTGTTGTTGGTGCGAAGTTATCTGAAGGGATCAACTTAAGTGATGGGATGGGCCGATGTATAGTCATGGTTGGACTACCCTATGCTAGTCCATCTGATATAGAGTTGTTGGAGAGGATAAAGCACATTGATCGTTTTCAAAATCTAAAGCTTGATAATTCTAGCGTTTCTACAAGTTATGATCTATACAGTGGACATGTTGAAGGTGGTTTTGCTGTCTTAAGAAGTTGCACTCACAGAGGAAAAGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCTATCCGTCACATTAATGACTATGCAGCAATTTTGTTGGTTGATGTAAGATACACATCTGATTCCTCAAAACGGAGTATGGCTCACCCAGTCACCAAGCTCCCGCAGTGGATAAAAGATCGTCTTGTTTCTTCTATTAGCTATGGTGAGACTGATCTCAACCGAATAAACATGTATGGTAACAACAACCGGCCCGGGTCAGCAATGGAAGCTGCTTCATGCACTGAAAGCTCCGTTTGTTTTTCCAGGCAAAGACTGCAAAAGAGCAAGAACGAGGAGAGAGCACAAGAGAAGAAGAAGAAAGGAAGCTCACAGGTCAGAAAAAAAGAGGACTTCAATTCAGAAAACATGAACAAGAAAGTTCATGTTTTAGCACAAAAGATGAAGGCAATGGATATGGTGGATGCGGGTGATCTAGAGCGTGTGCTAGACATAGAAGAGGCACTGCACTACTATTCTCGACTTAAGAGCCCTGTCTATGTAGATATCGTGGACACTTTTTTCATGAACATGCAATCAGAGTTATCTGCTTCGCAGCCATGTGCCAGCAGCATCAAACCCTCCAAGGAAAGGCTTGGTCCAATCCAGTTCAGATAA 3114 0.4155 MVDEEVAPKFPGFPFEPYSIQIDFMNSLYESLNEGGVSMLESPTGTGKTMSVISSALQWVLDKRLQQEAVCDENPGSGGGVGSDDEPDWMRDFVVNKVENNKKEEKYGSAWGKSHSRKKRTEIRKDFRVMGAGEEKGCESPQNKIDAVGVTDKEFLLEEYESEDERGPGSNMSKRKTVNTSFSSSSEDESSEEEEEEKKLKVYFCSRTHSQLSQFIKELRRTVFAKEMKVVSLGSRKNLCINEEVVALGNSTRINERCLELQKKKKNDAKKVKNLKVGSGIRRTKATSGCPMLRKHRVQQEFRNEVFQQRPLDIEDLANLGRTMGTCPYYGSRSMVRRADLVVLPYQSLLSKSSRDALGLNLKSNIVIVDEAHNLADSLINMYDSKITLSQLETVHNHLERYFLRFRSLLGPTNRRYIQTLMVLTQAFLRVLLDDKDGNLIDSCRDIDQASEKSSSDFTMAINDFLFEQNIDNINLVKLLKYIKESNIMHKVSGYGEKFAAMAKIPAHHNIEQHAEEGSCLSAFQALANMLLSLTNNDGDGRIIISRFRLTSLKKQGGYLKYVMLSGEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPWLPPNQLHFFSCGHIVPPDSIMPIAVARGPTGRTFDFSFSSRSSPDMMRELGLLLCNLVTVVPEGIVVFFPSFDYENRVYEHWELSGILERITKRKRVFREPRNNMDVESVLKEYKDTIYTLSGMNSEVNQASCSGAILLAVVGAKLSEGINLSDGMGRCIVMVGLPYASPSDIELLERIKHIDRFQNLKLDNSSVSTSYDLYSGHVEGGFAVLRSCTHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDVRYTSDSSKRSMAHPVTKLPQWIKDRLVSSISYGETDLNRINMYGNNNRPGSAMEAASCTESSVCFSRQRLQKSKNEERAQEKKKKGSSQVRKKEDFNSENMNKKVHVLAQKMKAMDMVDAGDLERVLDIEEALHYYSRLKSPVYVDIVDTFFMNMQSELSASQPCASSIKPSKERLGPIQFR 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00157 1037 Pfam Helicase C-terminal domain 655 868 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vian9g00157 1037 MobiDBLite consensus disorder prediction 924 954 - -
Vian9g00157 1037 Pfam DEAD_2 204 392 IPR010614 GO:0003677|GO:0003678|GO:0005524
Vian9g00157 1037 SMART deadxpd 9 415 IPR006554 GO:0003678|GO:0016818
Vian9g00157 1037 Gene3D - 176 430 IPR027417 -
Vian9g00157 1037 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 421 IPR014013 GO:0005524
Vian9g00157 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 388 IPR027417 -
Vian9g00157 1037 Gene3D - 14 74 IPR027417 -
Vian9g00157 1037 SMART ultradead3 13 450 IPR014001 -
Vian9g00157 1037 SMART Cxpdneu3 673 859 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vian9g00157 1037 MobiDBLite consensus disorder prediction 172 186 - -
Vian9g00157 1037 MobiDBLite consensus disorder prediction 925 954 - -
Vian9g00157 1037 Gene3D - 633 873 IPR027417 -
Vian9g00157 1037 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 12 882 IPR045028 -
Vian9g00157 1037 NCBIfam DNA repair helicase (rad3) 175 884 IPR013020 GO:0003678
Vian9g00157 1037 MobiDBLite consensus disorder prediction 160 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00157 Vian-Chr9 1266166 1275595 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00157 K11273 - gmx:106794132 1432.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00157 9 1266166 1275595 Vian9g00157 9 1266166 1275595 ECH