Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00138 ATGGAGTTGATTTCGGGTCTACCACAGGACGTAGCACGGGACTGTCTCATTCGGGTTTCGTACCAGCAGTTCCCCACGGTGGCTTCAGTGTGCAAGCTCTGGAAATCGGAGATTCTTTCGCCGGAGTACCACCGTCAACGGCGAAGCACGAAAAACGCGCAGAAGCTCGTAGCGATGGTTCAGGCTCGACACCAACCCGGAACTGGTTCGACCAAGCGAGTGACGAACCCGGTTTACCGTCTCAGCGTGTTCGAACCGGAAACGGGTCACTGGAACGAGCTGCCACCACCGCCCGAGTTTTATTCTGGGTTACCCATGTTCTGTCAGTTAGTTAGTGTCGGGTACGATCTTGTCTTGTTGGGCGGGTTGGACCCGAATTCGTGGAAAGCTTCGAATTCTGTGTTTGTGTATAATTTCTTGTCGGCGGAGTGGCGCCGCGCTGCGGACATGCCGGGTGGGCCCCGCACGTTTTTCGCTTGCGCGTCGGATTCTAAGGAGACGGTTTTTGTTGCCGGTGGACACGACAACGAGAAGAACGCGCTGCGTTCGGCGTTGGCCTATGAGGTTACCTCGGACCGGTGGGTTTCGCTTCCTGACATGGCGGCGGAGCGGGACGAGTGCAAGGGCGTTTTCCATGGCGGGAAGTTCTTCGTCGTCGGGGGCTACCTGACGGAGAAGCAGGGAAGGTTCGAGAAGAGCGCGGAGGCGTTCGATCCTGCTACATGGAGCTGGGACGAAGTGAAAGAGGACTTCCTGGATTGCGCCACGTGTCCGAGAACGTTAGTGGACGGTGGTGATGACGAGGCGGTGTTTCTTTGCAGAGGCGGGGACTTGATCTCGCTTCGCGACAACACGTGGCAGAAGATATCGACGGTGCCGGGGGAGATACCCAACGTAGCGTACATTGGGGCGTTGGATGGGACGCTGGTTTTGATCGGATCTAGCGGCTACGGTGAAGCCCACGTGGCTTTTGCTTTCGATTTTGAGTGTTGCAACTGGAGGAAACTGGATTGCCTAGAAGGGTTCATGGGTCATATCCAAACCGGTTGCGTTTTGGAAATTTAG 1065 0.5634 MELISGLPQDVARDCLIRVSYQQFPTVASVCKLWKSEILSPEYHRQRRSTKNAQKLVAMVQARHQPGTGSTKRVTNPVYRLSVFEPETGHWNELPPPPEFYSGLPMFCQLVSVGYDLVLLGGLDPNSWKASNSVFVYNFLSAEWRRAADMPGGPRTFFACASDSKETVFVAGGHDNEKNALRSALAYEVTSDRWVSLPDMAAERDECKGVFHGGKFFVVGGYLTEKQGRFEKSAEAFDPATWSWDEVKEDFLDCATCPRTLVDGGDDEAVFLCRGGDLISLRDNTWQKISTVPGEIPNVAYIGALDGTLVLIGSSGYGEAHVAFAFDFECCNWRKLDCLEGFMGHIQTGCVLEI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00138 354 SMART kelc_smart 167 214 IPR006652 GO:0005515
Vian9g00138 354 SMART kelc_smart 116 164 IPR006652 GO:0005515
Vian9g00138 354 SUPERFAMILY Kelch motif 76 338 IPR015915 GO:0005515
Vian9g00138 354 CDD F-box_AtAFR-like 3 47 - -
Vian9g00138 354 Gene3D - 52 342 IPR015915 GO:0005515
Vian9g00138 354 PANTHER OS02G0208700 PROTEIN 2 354 IPR044595 GO:0080037|GO:2000762
Vian9g00138 354 Pfam Kelch motif 207 248 IPR006652 GO:0005515
Vian9g00138 354 Pfam Kelch motif 166 200 IPR006652 GO:0005515
Vian9g00138 354 Pfam Kelch motif 105 155 - -
Vian9g00138 354 SUPERFAMILY F-box domain 3 53 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00138 Vian-Chr9 1125575 1126639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00138 7 209 Miscellaneous Gene Families AT4G33900 24.779 2.57e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00138 - - gmx:100796602 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00138 9 1125575 1126639 Vian9g00138 9 1125575 1126639 ECH