Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00122 ATGGGCAATAACAACAGTACGTGGCGTAAAAGCCGCAACGTGGCATCTCAGAAACAACAACTTCGTATTTCAATATGGAAACGTAAATTGGTGTTTAAGGAAAGGCGCGAAGAAGAGGATTCGGTTCAAACCTTCACCTTTGCAATTGTGCCTTCGATGATGGGATCCGGGTCGGGTTCTCTGGTGTGGTTCAGGAAGGGGATTCGGATCCACGACAACCCGGCTCTCGAGTTCGCGTCCCGAAGTGCCTCTCATCTCTACCCTGTCTTCGTGATTGACCCGCATTATATGAAACCCGACCCGGATGCTTTCTCACCTGGATCATCGCGCGCGGGTCTGAACCGCATCAAGTTCTTGTTGGAGAGCCTCGTGGACCTGGACCTCAACCTCAAGAACCTTGGCTCGCGACTTTTGATTCTCAAGGGTGACCCAGCTGAAGTCTGGAATGTCAGCAAGCTGTGCTTTGAGTACGACACTGAACCGTATTATCAGGCTCTGGATGTTAAAGTTAAGAACTTTGCACTCGCTGCTGGAATTGAGGTTTTCTCTCCTGTGAGTCACACACTCTTCAACCCCACGGATATTATACAAAAGAACGGAGGGAAGCCACCCCTTAGTTATCAATCGTTTGTCAAACTTGCTGGGGAACCACCCTCTCCTCTCACAACCGTGTACTCTTCACTTCCTCCAGTTGGCCATCTTGGAAGTTGTGATATTTCTGAAGTTCCTACCATCACAGATCTTGGATATGGAGATGCTGAACAGAAGTGGGTGGCAAACTTTGAGAAACCAAAGGGCAATCCATCTGCATTTCTGAAGCCGGCAACAACTGTTTTATCACCGTACCTGAAATTTGGTTGTTTATCTTCAAGATATTTCTACCAGCGAATTCAGGATATATATAGAAGTATGCCAAAGCATACATCACCACCTGTTTCTCTTACCGGACAGTTGTTATGGCGAGAGTTCTTTTACACGGCTGCTTTTGGCACTCCAAATTTTGATAGAATGAAAGGCAATAGGATATGCAAGCAGTTTGTTCACTGGGAAAAAGGACGGGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCAATTAATAACGGAAATTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTACAATCGTATTTATTCCCCAACCACATTTGGTAAGAAGTATGATCCTAATGGCGACTATATTAGACATTTTCTCCCAGTCTTAAAAGATATGCCCAAGGAGTACATTTATGAACCTTGGACTGCTCCTAAAAGTATTCAGACCAAAGCAAATTGCATAATTGGTAAAGACTACCCAATACCAGCTAGTAAAGAGTGCCGAAGGAAAATGGGGGAAGCATATGCATTGAATAAAGAATTGAATGGGTTGGTTGGTGAAGATGATCTGAAAAACTTGAGGAGGAAATTAGACGAGAGTGAAAGGCAAGAGCCTGAAGGCAAAAGATATAAGCAAAAACTGATTGGCTGA 1497 0.4436 MGNNNSTWRKSRNVASQKQQLRISIWKRKLVFKERREEEDSVQTFTFAIVPSMMGSGSGSLVWFRKGIRIHDNPALEFASRSASHLYPVFVIDPHYMKPDPDAFSPGSSRAGLNRIKFLLESLVDLDLNLKNLGSRLLILKGDPAEVWNVSKLCFEYDTEPYYQALDVKVKNFALAAGIEVFSPVSHTLFNPTDIIQKNGGKPPLSYQSFVKLAGEPPSPLTTVYSSLPPVGHLGSCDISEVPTITDLGYGDAEQKWVANFEKPKGNPSAFLKPATTVLSPYLKFGCLSSRYFYQRIQDIYRSMPKHTSPPVSLTGQLLWREFFYTAAFGTPNFDRMKGNRICKQFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPKEYIYEPWTAPKSIQTKANCIIGKDYPIPASKECRRKMGEAYALNKELNGLVGEDDLKNLRRKLDESERQEPEGKRYKQKLIG 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00122 498 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 59 234 IPR036155 -
Vian9g00122 498 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 258 446 IPR036134 -
Vian9g00122 498 Pfam FAD binding domain of DNA photolyase 346 445 IPR005101 -
Vian9g00122 498 PANTHER CRYPTOCHROME 60 346 IPR002081 -
Vian9g00122 498 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 58 189 IPR006050 -
Vian9g00122 498 Pfam DNA photolyase 60 214 IPR006050 -
Vian9g00122 498 MobiDBLite consensus disorder prediction 478 498 - -
Vian9g00122 498 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 343 497 - -
Vian9g00122 498 Gene3D HUPs 56 186 IPR014729 -
Vian9g00122 498 Gene3D - 187 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00122 Vian-Chr9 925225 929070 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00122 K02295 - gmx:100780347 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00122 9 925225 929070 Vian9g00122 9 925225 929070 ECH