Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00076 ATGGGGGGAGCATGTTCTAGGAAGCGAGAGCAGGACAATGAAGATAGTATTATCAGAGGACTATCACGAAGCTATTCTAGATGTGGGAGTTTGAAATGGTGGACATCCTCTTTTTCTTATCCATCTGTTGATTTTCACTTACGAAAAGGAGAATGTCCACCACTTTTGGACCTGTGCATACAGAAAATAAATGAGGACATTGATAAATATAACTCATTTTCTATGCTGCCACGGGATATAAGTCAGTTAATTTTTAATAATTTGGTTTACTCGAGATGTCTAACCAGTGCTTCCTTCGAAGCTTTTCGTGATTGTGCTCTACAGGATCTTTACTTAGGAGAATATGATGGTGTTAATGATAATTGGATGGACGTCATCTCATCCCAGGGTTCATCTTTACTTTCTGTAGATCTTTCTGGGTCTGATGTCACTGATTTTGTGCTGACATACCTTAAAGATTGTGGAAGTCTAATTTCTTTGAATCTAAATTACTGTGATCAAATTTCAGATCGTGGACTAGAGTGTATCAGTGGCCTGTCAAACTTGACAAGTTTGAGTTTTAGACGAAATGATTCAATTTCTGCTAAGGGAATGAGTGCCTTTTCTGGTCTTGTCAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTGGTATTCATGGAGGCCTTGTTCATCTTCGAGGTTTGACCAAGTTGGAATCTCTCAATTTAAAGTGGTGTAATTGCATAACAGATTATGATATGAAACCTCTTTCAGAGCTTGGTAGCCTGAAAAGTCTGGAGATTTCATCCAGTAAAGTCACTGATTTTGGCGTCAGTTTCCTGAGAGGGTTACAGAAGCTTGCCCTGTTAAATTTGGAAGGGTGCCTTGTAACAGCTGCATGCTTGGATTCTCTTGCAGAGCTTCCTGCGCTATCAAACTTGAATCTTAATAGATGCAATATCTCTGACAATGGATGCGAAAAATTCTCACGACTGGAAAATTTGAAAGTATTAAACTTGGGATTTAATGTCATAACAGATACATGTTTAATTCACTTGAAAGGACTGACAAAGTTGGAGAGCTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGGTTGGTCAATTTGGCTGGCCATGAGCGATTGAACTGCTTGGAATTGTCTGATACAGAGGTTGGTAGCAATGGACTACAGCATTTATCAGGACTGTCTAATCTGCAGAAAATAAATCTTTCTTTTACCATGGTTAGTGACGGTGGTTTAAGCAAATTGCGTGGACTCTCATCTCTGAAGTCCCTTAATTTGGATGCTTACCAAATTTCTGACATTGGGCTGTCAAACCTTACAAGTTTGACTGGCCTCACTGACCTGGATTTGTTTGGTGCACGAATCACAGATTTTGGTACAAACTATTTGAAAAAGTTTAAGAACCTGAGGTCTTTGGAAATATGTGGTGGAGCTTTGACTGATGCTGGTGTGAAAAATATCAAAGAGCTTTCTTCTCTGGTCTGCTTAAATTTATCACAAAACAGCAATCTTACAGACAAAACTCTTGAGTTAATTTCAGGGCTCACTGGGTTGGTTTCTTTGAATGTTTCAAATTCTCGTATCACCAATGCTGGTCTGCAGCATTTGAAAGCACTCAATAACTTGAGATCTCTGACATTGGAGTCCTGTAAGGTGACAGCAAATGACATGAAGAAACTGAAATCAATATACCTCCCGAATCTGGTAAGCTTTCGGCCAGGTTAG 1734 0.3933 MGGACSRKREQDNEDSIIRGLSRSYSRCGSLKWWTSSFSYPSVDFHLRKGECPPLLDLCIQKINEDIDKYNSFSMLPRDISQLIFNNLVYSRCLTSASFEAFRDCALQDLYLGEYDGVNDNWMDVISSQGSSLLSVDLSGSDVTDFVLTYLKDCGSLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSISAKGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELGSLKSLEISSSKVTDFGVSFLRGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNISDNGCEKFSRLENLKVLNLGFNVITDTCLIHLKGLTKLESLNLDSCKIGDEGLVNLAGHERLNCLELSDTEVGSNGLQHLSGLSNLQKINLSFTMVSDGGLSKLRGLSSLKSLNLDAYQISDIGLSNLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGALTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKALNNLRSLTLESCKVTANDMKKLKSIYLPNLVSFRPG 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00076 577 FunFam Leucine-rich repeat family protein 474 573 - -
Vian9g00076 577 SUPERFAMILY RNI-like 274 566 - -
Vian9g00076 577 FunFam Predicted protein 118 219 - -
Vian9g00076 577 PANTHER UNCHARACTERIZED 46 244 - -
Vian9g00076 577 Gene3D Ribonuclease Inhibitor 55 259 IPR032675 -
Vian9g00076 577 FunFam F-box/LRR-repeat protein 14 299 382 - -
Vian9g00076 577 Pfam Leucine Rich repeat 180 202 IPR001611 GO:0005515
Vian9g00076 577 Pfam Leucine Rich repeat 156 177 IPR001611 GO:0005515
Vian9g00076 577 Pfam Leucine Rich repeat 229 250 IPR001611 GO:0005515
Vian9g00076 577 Pfam Leucine rich repeat 471 531 IPR001611 GO:0005515
Vian9g00076 577 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Vian9g00076 577 SUPERFAMILY RNI-like 116 362 - -
Vian9g00076 577 SMART LRR_CC_2 349 373 IPR006553 -
Vian9g00076 577 SMART LRR_CC_2 154 179 IPR006553 -
Vian9g00076 577 SMART LRR_CC_2 228 253 IPR006553 -
Vian9g00076 577 SMART LRR_CC_2 421 445 IPR006553 -
Vian9g00076 577 SMART LRR_CC_2 493 518 IPR006553 -
Vian9g00076 577 SMART LRR_CC_2 301 325 IPR006553 -
Vian9g00076 577 SMART LRR_CC_2 519 542 IPR006553 -
Vian9g00076 577 FunFam Leucine-rich repeat family protein 220 298 - -
Vian9g00076 577 Gene3D Ribonuclease Inhibitor 336 405 IPR032675 -
Vian9g00076 577 Gene3D Ribonuclease Inhibitor 480 572 IPR032675 -
Vian9g00076 577 Gene3D Ribonuclease Inhibitor 260 335 IPR032675 -
Vian9g00076 577 Gene3D Ribonuclease Inhibitor 406 479 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00076 Vian-Chr9 631387 641289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00076 268 504 Miscellaneous Gene Families AT4G39270 28.333 1.27e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00076 - - gmx:100800666 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00076 9 631387 641289 Vian9g00076 9 631387 641289 ECH