Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00061 ATGTCAGAAGAAGAATTACAGTTACCTGCTGAATGCTGGGAATTGGTATTCAAATTCCTCAATCCCATTCCTCACTTCGAACCTCTCTCCCTTGTCTCAACCCAATTCCTCTCCATCACCAACCTCCTCCGAACCTCCCTCACCATATCCAACCCTACGCTTCCCTTTCTCCCCAACCTCTTCCGAAGGTTCTCCTCCATCACCTCCCTTCATATCACGCGCCTCCACCACTCCCACCTCCACACGCTCCTCCTCCAACTCTCACGTGCCGCCCTACCGCTCCAATCCCTCAACCTCTCCGGCCAGCCCTCCCTCCCCTCAAATGGGTTGCGCGCGTTCGCCAGAAAGATCCCAACTTTAAAATCCCTCATCTGCTCCCACATGACTTGTCTCCGAAACGCCGATCTCCTTCTAATAGCTGACTGTTTCTCTTTTCTCGAACATCTCGACCTCAGTTTCCCTGAAAATAACGACAATTCAACCGACCCAGTTTCCGATTTCGGCGTAAAGGCTCTCTCTTTGGCCCTCCCCAAGCTCCGTAGCGTTAACCTATCCGGCAATTACTTCATCAGCGACACTTCCATTCTCAGTCTCTGCAAGAACTGCGAGCGTCTCGGAGAAATTATAATCCTCGAGTGCCACTTCATCACGCAGCGTGGCATCGCTTCCGCGATTCATGAAAGACCGTGTTTGCGTTCTTTCTGTGTTAACAATTTCGGGTATGGAACAAAGAAGGGTGACATTGCCAGACCCTATGTGACTTCTGATTTCATCAGTGCGTTGGTGGGTTTGAAGGGCTTGACTTGTCTCGATTTGTCATGTTCTTCTATCTCTGATGAGTTGCTATGCTGTGTTGCGGAGGAAGGGATTCCTTTGAAGAAGCTTGTTTTACAAGGTTGCTGTAACTACACTTACGTTGGAGTGTTGTGCTTGTTGTCCTCATGTCAGTCAATGGAGCATTTGGATCTTCAAAACACCGAGTTTCTTTGTGATCGGCGTGTGGAAGTGTTGTGTGAGTTTCTTGGGAATTTGGTGACTATAAATGTTAGTGGTTGTAGGACGTTAACTGATTTAGCTTTGTTTGCACTCATTAAGAACTGTCCTTTGTTGAATGAGATCAAAATGGAGGCAACAGATGTTGGGAAGAAGGGGATGGATGAGGAGTTGGTGAATGGTGTTGTGAATTATCGAGTGAAGTCTCTCTATTTGGGAAGAAATTCCTGGTTGAGGGATGAAAGCCTTGAAATGATTGCTTCTGTTTGCCCCAGTTTGGAGGTGCTCGATTTGAGCTCTTGCTGTGACATATCTGAAGGTGTTGTTGAGGTTTTAAGGAGGTGTAGCGAGGTTAGGAATTTGAGCTTGGCCTTTTGTTCAGGAGTGAAGTTAAAAGGGCTGGAATTTGAAGTTCCAAAACTAGTAGAGTTGAACTTGTCAGGATCAAGAGTTGATGATGAAACACTTTCTGTGATCTCAAAGTGTTGTCGTTGGTTGCTGCATTTGGACTTGGAAAATTGCTATAAGGTCACAGCCAATGGAGTTAGGGAAGTGGTAGATAAGTGCAGGCGATTGAGGGAGATTAATTTGGTGTCATGTTGTGAAGTGGAAGCTAGTGTTGTAGCTTGGATGGTATTTTCAAGGCCATCATTGAGAAGGATAATGGCCCCCCCGAGTTTTGATCTTAGTGGTGGCCAGAGGGAATTTCTCTTGCGTCATGGTTGCATAGTTAGCTTGTAA 1734 0.4648 MSEEELQLPAECWELVFKFLNPIPHFEPLSLVSTQFLSITNLLRTSLTISNPTLPFLPNLFRRFSSITSLHITRLHHSHLHTLLLQLSRAALPLQSLNLSGQPSLPSNGLRAFARKIPTLKSLICSHMTCLRNADLLLIADCFSFLEHLDLSFPENNDNSTDPVSDFGVKALSLALPKLRSVNLSGNYFISDTSILSLCKNCERLGEIIILECHFITQRGIASAIHERPCLRSFCVNNFGYGTKKGDIARPYVTSDFISALVGLKGLTCLDLSCSSISDELLCCVAEEGIPLKKLVLQGCCNYTYVGVLCLLSSCQSMEHLDLQNTEFLCDRRVEVLCEFLGNLVTINVSGCRTLTDLALFALIKNCPLLNEIKMEATDVGKKGMDEELVNGVVNYRVKSLYLGRNSWLRDESLEMIASVCPSLEVLDLSSCCDISEGVVEVLRRCSEVRNLSLAFCSGVKLKGLEFEVPKLVELNLSGSRVDDETLSVISKCCRWLLHLDLENCYKVTANGVREVVDKCRRLREINLVSCCEVEASVVAWMVFSRPSLRRIMAPPSFDLSGGQREFLLRHGCIVSL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00061 577 FunFam F-box/LRR-repeat protein 20 467 554 - -
Vian9g00061 577 Gene3D Ribonuclease Inhibitor 243 383 IPR032675 -
Vian9g00061 577 Gene3D Ribonuclease Inhibitor 4 241 IPR032675 -
Vian9g00061 577 Gene3D Ribonuclease Inhibitor 466 553 IPR032675 -
Vian9g00061 577 PANTHER UNCHARACTERIZED 7 304 - -
Vian9g00061 577 SMART LRR_CC_2 289 314 IPR006553 -
Vian9g00061 577 SMART LRR_CC_2 341 366 IPR006553 -
Vian9g00061 577 SMART LRR_CC_2 421 445 IPR006553 -
Vian9g00061 577 SMART LRR_CC_2 91 116 IPR006553 -
Vian9g00061 577 SMART LRR_CC_2 202 227 IPR006553 -
Vian9g00061 577 SMART LRR_CC_2 494 519 IPR006553 -
Vian9g00061 577 SMART LRR_CC_2 176 201 IPR006553 -
Vian9g00061 577 SMART LRR_CC_2 469 493 IPR006553 -
Vian9g00061 577 SUPERFAMILY RNI-like 38 379 - -
Vian9g00061 577 Pfam Leucine Rich repeat 421 435 IPR001611 GO:0005515
Vian9g00061 577 Gene3D Ribonuclease Inhibitor 384 465 IPR032675 -
Vian9g00061 577 SUPERFAMILY RNI-like 302 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00061 Vian-Chr9 482577 484310 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00061 K10268 - gmx:100819538 874.389