Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00050 ATGCCGCTGATTTTACCGAAAAGCGATTCGATCCAGATTCGCGAGGTGTGGAACGATAACCTGGAAGAGGAATTCTCGTTGATTCGCGAAATAGTGGACGATTACCCTTACATCGCGATGGACACGGAGTTTCCGGGGATAGTTCTCCGACCGGTGGGGAATTTTAAGAACAGCTACGATTACCATTACCAAACCCTAAAGGACAACGTCGACATGCTAAAGCTCATACAATTGGGACTCACCTTTTCCGACGAGTACGGCAACCTTCCCACGTTCGCCACCGACGTCGACGACGATTCCCACACGTGCTGCATCTGGCAATTCAATTTCCGGGAGTTCAACGTCAACGAGGACGTCTTCGCCAACGATTCCATCGAGCTTTTGCGCCAGAGCGGCATCGATTTCAAGAAAAACAACGAGGACGGCATCGACGCCCGCCGTTTCGGGGAACTTCTCATGTCGTCCGGGATCGTTTTGAATGACAACGTTCATTGGGTTACTTTCCATAGCGGTTATGATTTCGGGTACTTGTTGAAGCTCTTGACGTGTCAGAATTTGCCCGATACGCAAGCGGAGTTCTTCAACCTCATCAACATGTATTTCCCCACTGTATACGACATCAAGCACCTCATGAAATTCTGCAACAGCCTTCACGGCGGTTTGAACAAGCTTGCCGAGTTGTTGGAGGTCGAAAGGGTCGGGATTTGCCATCAGGCCGGTTCCGATAGTTTGCTCACTTCATGTACGTTCAGGAAATTGAAGGACAATTTCTTTAGTGGCTCGTTGGAGAAGTATGCTGGTGTCTTGTATGGGTTAGGTGTTGAGAATGGACAGGGAGCCCATTGA 846 0.4941 MPLILPKSDSIQIREVWNDNLEEEFSLIREIVDDYPYIAMDTEFPGIVLRPVGNFKNSYDYHYQTLKDNVDMLKLIQLGLTFSDEYGNLPTFATDVDDDSHTCCIWQFNFREFNVNEDVFANDSIELLRQSGIDFKKNNEDGIDARRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCQNLPDTQAEFFNLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKDNFFSGSLEKYAGVLYGLGVENGQGAH 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00050 281 FunFam Putative CCR4-associated factor 1 7 4 276 - -
Vian9g00050 281 Gene3D - 1 276 IPR036397 GO:0003676
Vian9g00050 281 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11 273 IPR039637 GO:0004535|GO:0030014
Vian9g00050 281 Pfam CAF1 family ribonuclease 166 226 IPR006941 -
Vian9g00050 281 Pfam CAF1 family ribonuclease 16 143 IPR006941 -
Vian9g00050 281 SUPERFAMILY Ribonuclease H-like 4 274 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00050 Vian-Chr9 413823 414668 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00050 K12581 - gmx:100789409 541.191