Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00028 ATGGTGGTCAACGCCACCGAGTTGCCACCGGAAGACTACTACGACTACATCGTCGTGGGTGGCGGCACTGCGGGGTGCCCACTGGCGGCGACGCTCTCGCAGTCGTTTCGGGTGCTTGTGCTGGAAAGAGGAGGCGTTGGGAGCGGGAACCCCGACCTCATCAACCAAGAAGGGTTCTTGAGCAACCTCTTGAACGCCGAGAATGAGGACTCGCCGGCCCAGGCTTTCATTTCCGAAGAGGGAGTGCCCAACGCCCGCGGGCGGGTTCTTGGCGGCAGCAGCGCCATCAACGCGGGCTTCTACAGCCGAGCCCACCGAGATTTCTTCGTTAAGTCGGGCTTGCCCTGGGACCTGGCGCTGGTGAACCACTCGTACCGGTGGGTGGAGAAGGAAATCGTGTTCAGACCCAACCTCAAGACGTGGCAATCCGCGGTTCGCGATGGGTTGCTGGAAGCAGGGGTCACTCCCTACAACGGTTTCACTCTGGACCACGCCGAGGGGACCAAGATTGGGGGCTCCACCTTCGACGGCTCTGGCACCAGACACACCTCTGCGGATCTTCTCAGGCACGCTCGTTCATCAAACATCAAGGTCGCCGTTCACGCCACCGTAGAGAGGCTGCTTCTGGCGGGCTCCAGCGCTATCGGAGCCCTGTACCGCGACCAGATGGGGGGGCACCACCACGCATTCTTGCGGGAACACGGAGAGGTGATTCTGTCTGCCGGTGCCATTGGAAGCCCTCAGCTTCTTCTTCTTAGCGGGATCGGTCCCAGGCCCTATCTCTCTTCATGGGGGATCCCTGTGGCTCATCACCTCCCCTACGTGGGTCACTTCCTCTACGATAATCCCAGGAACGGAATCACCATTCTCCCTTCCCTTCCACTCGATCATTCTCTCATCCAAGTCGTCGGGATCACCGACTCCGGCGCTTACATCGAGGCCGCATCCAACGTCATCCCTTTCACCTCCCCTCGCCACACCACCTTCGTCCGCTCCCCCCTCTACCTCACCGTGGCCACCATCATTTCCAAGATTTCCGGCCCTCTCTCCGCCGGCTTTCTGAGACTCGCTTCCACCAACGTCGACGCAAATCCCCGAGTGAGGTTCAATTACTTCCACAACCCCGTCGACCTCGAGCGCTGCGTCAACGGGACCAGAAAGATAGCCCAAATCCTAGGGAGCAGGGCCTTGAAGGACTTCAAATTCTCCAACTGGTTGGGAGAGCCAGACTTCAGGTTCATAGGCCCCGCATTGCCGCTTCACCAAACGGACTATCCTCGCATGGCCGATTTCTGCCGCCGGACTGTGAGCACCATCTGGCACTACCACGGCGGTTGCGTGGTTAGCAGGGTGGTTGATCCCAATCTGAAGGTCATCGGAATGGATTCCCTTCGTATTGTTGACGGATCCGTCTTTAGCGTATCGCCTGGAACCAATCCTCAGGCCACCCTCATGATGCTCGGACGGTATTTTGGGTTGAAGATTATCAGAGAAAGGAACGCATCCAAATGA 1512 0.588 MVVNATELPPEDYYDYIVVGGGTAGCPLAATLSQSFRVLVLERGGVGSGNPDLINQEGFLSNLLNAENEDSPAQAFISEEGVPNARGRVLGGSSAINAGFYSRAHRDFFVKSGLPWDLALVNHSYRWVEKEIVFRPNLKTWQSAVRDGLLEAGVTPYNGFTLDHAEGTKIGGSTFDGSGTRHTSADLLRHARSSNIKVAVHATVERLLLAGSSAIGALYRDQMGGHHHAFLREHGEVILSAGAIGSPQLLLLSGIGPRPYLSSWGIPVAHHLPYVGHFLYDNPRNGITILPSLPLDHSLIQVVGITDSGAYIEAASNVIPFTSPRHTTFVRSPLYLTVATIISKISGPLSAGFLRLASTNVDANPRVRFNYFHNPVDLERCVNGTRKIAQILGSRALKDFKFSNWLGEPDFRFIGPALPLHQTDYPRMADFCRRTVSTIWHYHGGCVVSRVVDPNLKVIGMDSLRIVDGSVFSVSPGTNPQATLMMLGRYFGLKIIRERNASK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00028 503 Gene3D - 134 438 - -
Vian9g00028 503 PIRSF Alcohol_oxidase 3 314 IPR012132 GO:0050660
Vian9g00028 503 PIRSF Alcohol_oxidase 313 503 IPR012132 GO:0050660
Vian9g00028 503 ProSitePatterns GMC oxidoreductases signature 2. 242 256 IPR000172 GO:0016614|GO:0050660
Vian9g00028 503 SUPERFAMILY FAD-linked reductases, C-terminal domain 279 445 - -
Vian9g00028 503 PANTHER OSJNBA0019K04.7 PROTEIN 2 500 - -
Vian9g00028 503 Pfam GMC oxidoreductase 14 282 IPR000172 GO:0016614|GO:0050660
Vian9g00028 503 Pfam GMC oxidoreductase 348 489 IPR007867 GO:0016614
Vian9g00028 503 Gene3D - 14 488 IPR036188 -
Vian9g00028 503 SUPERFAMILY FAD/NAD(P)-binding domain 8 301 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00028 Vian-Chr9 293813 295435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00028 4 499 Miscellaneous Gene Families AT5G51950 47.048 6.46e-148 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00028 K08248 - gmx:100820069 880.167