Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01499 ATGGAAGATGATCATTTTCCTCAGATCAAAGGTGTTGTTATAATCTCCCTTCCACCCCCAGATAACCCTTCTTTGGGCAAAACCATCACTGCTTTTACTTTCTCTGACCCTTCTTCTCTTCAACCCTCAATTCTTCAACAACCAGGCCAAAACCAAACAAACCTCAATGATCACAACAACACTGATCCTTCCCTTCACTCCAACCCGTCTAATACTCAGCTTAGTTTTTCACTCAGAGGACTCTTCCACTCCACCCCAGTGAAGCTTTTCTCCTTCTTTGGTGTTCTTCTCTTTGCTCTCTTTCTCTATGGTTCTGTTTCTTCAACCACCACTTTGGAACTGAGTGGCCCCAAGAATGATAGTGATGATGATGGCAAACCCGGATCATATTTGTTCCCTCTGTATCCTAAATTTGGTGCTTTGGGGCAGAAGAACATGAAGCTCCAACTGGGGAAGCTTGTTCATAAAGAAAAGATTTTGACACAAACAAAAAATAGGGTTGGTTCCGAGGTTGTGGCCGTTGACTCTTCTTCGGTTTTTCCTGTCAGTGGCAATGTTTTTCCGGACGGATTGTATTTCACTATTTTACGTGTTGGAAATCCTCCAAGAAGTTATTTTCTTGATGTGGATACAGGGAGTGACTTAACCTGGATGCAGTGTGATGCTCCTTGCAGAAGTTGTGGAAAGGGAGCTCATGCCCTCTACAAGCCCACAAGATCCAATGTAGTATCAACCATGGACTCTCTCTGCTTGGATGTTCAGAAAAATCAGAAGAATGGACATCACGAAAGTTTTCAACAGTGTGACTATGAAATTGAATATGCAGATAGGAGTTTTTCCTTGGGAGTTCTTATTAGAGACGATCTTCATCTTGTATCTAAAAATGGATCCAAAATCAAGCTAAATTTTGTTTTTGGGTGTGGATATGATCAAGAAGGCTTACTTTTGAACACATTGGCAAAGACAGATGGAATCATGGGACTGAGCAGGGCAAAAGTGAGCCTACCTAACCAGTTAGCAAGTAAAGGGCTTATTAAGAATGTGGTTGGTCATTGCTTGAGCAATGATGAAGTTGGTGGAGGTTACATGTTTTTGGGTGATGATTTCTTGCCATATTGGGGTATGACTTGGGTACCAATGGCCTATACCCTTACTACGGATTTATACCAAACTGAGATTTTTGGAATAAATTATGGAAATCGGCAACTCAGTTTTGATGGCCAAAGCAAAGTAGGAAAGGTGGTTTTTGACAGTGGCAGTTCTTATACATATTTCCCAAAAGAAGCATACTTGGATCTTGTTGCTTCTCTTAATGAAGTTTCTGGCTTGAAACTCGTTCAAGATGATTCAGATACTACTTTACCCATTTGCTGGCAAGCAAATTTCCCAATCAAATCTGTCAAAGATGTCAAGGATTACTTCAAGACCTTATCTCTTCGGTTTGGAAACAAGTGGTGGATTTTGTCCACAATTTTTCAGATACCTCCAGAGGGTTACTTGATCATTAGTAACAAAGGGAATGTGTGCTTGGGTATCCTTGATGGTAGTGATGTAAATGATGGATCCTCAATCATTCTTGGAGACATTTCATTCAGAGGATACTTAGTTGTGTACGATAATGCAAAGCAGAAAATTGGTTGGAAGCGAGCAGACTGTGACATGTCAAGCAGAAGATTGAGAAAGAAAAACAGTTTTATCCCTGATACCATGCTATAA 1716 0.4062 MEDDHFPQIKGVVIISLPPPDNPSLGKTITAFTFSDPSSLQPSILQQPGQNQTNLNDHNNTDPSLHSNPSNTQLSFSLRGLFHSTPVKLFSFFGVLLFALFLYGSVSSTTTLELSGPKNDSDDDGKPGSYLFPLYPKFGALGQKNMKLQLGKLVHKEKILTQTKNRVGSEVVAVDSSSVFPVSGNVFPDGLYFTILRVGNPPRSYFLDVDTGSDLTWMQCDAPCRSCGKGAHALYKPTRSNVVSTMDSLCLDVQKNQKNGHHESFQQCDYEIEYADRSFSLGVLIRDDLHLVSKNGSKIKLNFVFGCGYDQEGLLLNTLAKTDGIMGLSRAKVSLPNQLASKGLIKNVVGHCLSNDEVGGGYMFLGDDFLPYWGMTWVPMAYTLTTDLYQTEIFGINYGNRQLSFDGQSKVGKVVFDSGSSYTYFPKEAYLDLVASLNEVSGLKLVQDDSDTTLPICWQANFPIKSVKDVKDYFKTLSLRFGNKWWILSTIFQIPPEGYLIISNKGNVCLGILDGSDVNDGSSIILGDISFRGYLVVYDNAKQKIGWKRADCDMSSRRLRKKNSFIPDTML 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01499 571 PANTHER ASPARTYL PROTEASES 97 546 IPR001461 GO:0004190|GO:0006508
Vian8g01499 571 FunFam Aspartyl protease family protein 169 367 - -
Vian8g01499 571 MobiDBLite consensus disorder prediction 40 69 - -
Vian8g01499 571 FunFam Aspartyl protease APCB1 372 558 - -
Vian8g01499 571 Gene3D Acid Proteases 170 367 IPR021109 -
Vian8g01499 571 ProSiteProfiles Peptidase family A1 domain profile. 192 548 IPR033121 -
Vian8g01499 571 PRINTS Pepsin (A1) aspartic protease family signature 524 539 IPR001461 GO:0004190|GO:0006508
Vian8g01499 571 PRINTS Pepsin (A1) aspartic protease family signature 414 425 IPR001461 GO:0004190|GO:0006508
Vian8g01499 571 PRINTS Pepsin (A1) aspartic protease family signature 198 218 IPR001461 GO:0004190|GO:0006508
Vian8g01499 571 Gene3D Acid Proteases 373 554 IPR021109 -
Vian8g01499 571 Pfam Xylanase inhibitor C-terminal 404 548 IPR032799 -
Vian8g01499 571 SUPERFAMILY Acid proteases 183 554 IPR021109 -
Vian8g01499 571 Pfam Xylanase inhibitor N-terminal 192 367 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01499 Vian-Chr8 34462497 34466194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01499 174 553 Miscellaneous Gene Families AT1G77480 45.170 4.13e-109 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01499 - - gmx:100810687 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01499 8 34462497 34466194 Vian8g01499 8 34462497 34466194 ECH