Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01411 ATGGCTGTGGCTGATGATGCCTTTGATGAGCAGTGTGATTACCTTTTCAAAGCTGTTCTGGTAGGAGACTCAGGCGTTGGGAAGACAAATCTGATATCAAGGTTTGCAAAAGATGAATTCAGGTTAGATTCGAAGCCAACCATAGGTGTTGAATTTGCTTACAGAAACATCAAAGTCATCGACAAACTCATCAAAACACAGATATGGGACACTGCCGGCCAAGAGAGGTTTAGGGCTATCACAAGCTCATATTACAGAGGAGCCTTGGGAGCAATGCTGGTGTATGACATAACCAAGCGAGCAACTTTTGTGAATGTAAGAAAATGGCTTCATGAGTTGAGAGAGTTTGGAGGAGATGACATGGTGGTTGTTTTGGTGGGAAACAAATCTGATTTGGCGCAATCAAGGGAAGTTGAGAAAGAAGAAGGAAAAGGGTATGCAGAGACAGAAAGGTTGTGTTTCATGGAAACCTCTGCTCTGCAGAACCAGAATGTTGAGGAAGCATTCTTAGAAATGATCACCAAGATTCATGACATCATAAGTCACAAAAGTTTGGAAACCAAAATCAATGGCACATCATTAAATCTTCCCAGTGGCAAGGAAATCCATATAGCTGATGAAGTCACTGCTACTAAACAACCTAATTATTGCTGTTCATGA 660 0.4152 MAVADDAFDEQCDYLFKAVLVGDSGVGKTNLISRFAKDEFRLDSKPTIGVEFAYRNIKVIDKLIKTQIWDTAGQERFRAITSSYYRGALGAMLVYDITKRATFVNVRKWLHELREFGGDDMVVVLVGNKSDLAQSREVEKEEGKGYAETERLCFMETSALQNQNVEEAFLEMITKIHDIISHKSLETKINGTSLNLPSGKEIHIADEVTATKQPNYCCS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01411 219 ProSiteProfiles small GTPase Rab1 family profile. 11 218 - -
Vian8g01411 219 Gene3D - 8 218 IPR027417 -
Vian8g01411 219 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Vian8g01411 219 SMART ras_sub_4 13 179 - -
Vian8g01411 219 NCBIfam small GTP-binding protein domain 15 169 IPR005225 GO:0005525
Vian8g01411 219 SMART rho_sub_3 18 179 IPR001806 GO:0003924|GO:0005525
Vian8g01411 219 FunFam ras-related protein RABA5a 8 218 - -
Vian8g01411 219 CDD Rab11_like 13 177 - -
Vian8g01411 219 PRINTS Transforming protein P21 ras signature 57 79 - -
Vian8g01411 219 PRINTS Transforming protein P21 ras signature 16 37 - -
Vian8g01411 219 PRINTS Transforming protein P21 ras signature 154 176 - -
Vian8g01411 219 PRINTS Transforming protein P21 ras signature 119 132 - -
Vian8g01411 219 PRINTS Transforming protein P21 ras signature 39 55 - -
Vian8g01411 219 ProSiteProfiles small GTPase Ras family profile. 10 219 IPR001806 GO:0003924|GO:0005525
Vian8g01411 219 SMART rab_sub_5 16 179 - -
Vian8g01411 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 188 IPR027417 -
Vian8g01411 219 ProSiteProfiles small GTPase Rho family profile. 9 177 - -
Vian8g01411 219 SMART ran_sub_2 21 216 - -
Vian8g01411 219 PANTHER DRAB11-RELATED 10 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01411 Vian-Chr8 33419839 33423307 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01411 K07976 - gmx:100815793 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01411 8 33419839 33423307 Vian8g01411 8 33419839 33423307 ECH