Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01187 ATGGCTTCCATCCCCACACTTTCTCCATCCTTAACCAAACTCTTCTCTCACTCCACACCTCATTCCAACACCAACCACTGCACTCTTCCTCCCACCTCTCTCTTCGGCACCAGGATCACCCTCCAACGCGCCACCTCATCATCGTGTTCCCTCCCCAACACCAACTGTCGTGCCACGTCAGCAACGGTGTCGTTTAGCCTCCCCTCCCCGAAACCCCTTTCTGATGCGCCAGAGAAAACCCCAAAGTGGTCGGCGAGGGCTACAAAATCGTTTGCAATGGCAGAATTGGAGGCGAGGAAGATAAAGTTTCCCAACACGGGAACCGAGGCTATTCTGATGGGGATTTTGGTTGAAGGAACAAGTAGAGCTGCTAAATTCTTAAGAGCCAATGGAATTACACTTTTCAAAGTACGTGAAGAAACTTTAAATCTACTTGGCAAATCTGACTTGTATTATTTCAGCCCTGAACATCCTCCTTTGACTGAACCAGCCCAGTTAGCCCTTGAATGGGCTATTCAGGAGAAACTGAAATCAGGTGAAGGAGGAGAAATAAACGTGACACATATGCTTCTAGGAATTTGGTCACAGAAAGAATCAGCAGGACAAATTATTTTGGCTTCTCTAGGTTTCGATGATGAAAAAGCCAAAGAACTTGCTAAAACAATTGATGGAGGAGATGTTGATTTGAGTTTCAAAAGGCAAACATAA 708 0.459 MASIPTLSPSLTKLFSHSTPHSNTNHCTLPPTSLFGTRITLQRATSSSCSLPNTNCRATSATVSFSLPSPKPLSDAPEKTPKWSARATKSFAMAELEARKIKFPNTGTEAILMGILVEGTSRAAKFLRANGITLFKVREETLNLLGKSDLYYFSPEHPPLTEPAQLALEWAIQEKLKSGEGGEINVTHMLLGIWSQKESAGQIILASLGFDDEKAKELAKTIDGGDVDLSFKRQT 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01187 235 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 8 224 IPR044217 -
Vian8g01187 235 Pfam Clp amino terminal domain, pathogenicity island component 183 220 IPR004176 -
Vian8g01187 235 Pfam Clp amino terminal domain, pathogenicity island component 104 146 IPR004176 -
Vian8g01187 235 ProSiteProfiles Clp repeat (R) domain profile. 77 225 IPR004176 -
Vian8g01187 235 Gene3D - 82 229 IPR036628 -
Vian8g01187 235 SUPERFAMILY Double Clp-N motif 82 225 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01187 Vian-Chr8 30505194 30508302 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01187 - - var:108344079 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01187 8 30505194 30508302 Vian8g01187 8 30505194 30508302 ECH