Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01186 ATGCAAAGATTTCAGTTCTCGAGTATGATGATTCTATTCATGGACTTCGGACGAGAGTGGCTTCATCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCAGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGTGGAGCTCTTGTATATGATTTGCAAATGATAATACTAAAGGCCACTCAGGCTGGTTCTGGTTTAGTTGGGGACGATGATGCCTTGGGATTTTCAGGAGCAGTTGCTGCCCGAGTTGAGTCATCTTATATGATAAACCTCCGTGACTTGGATATGAGGCATGTAAAAGATTTTACGTTTGTTCATGGCTACATTGAACCTGTAATGGTTATTTTACATGAACGTGAACTCACTTGGGCTGGGCGTGTCTCATGGAAGCATCATACTTGCATGATATCAGCACTTAGTATCAGTACAACCTTAAAGCAGCATCCACTTATTTGGTCAGCTGCTAATCTCCCCCACGATGCATACAAGCTTCTTGCTGTGCCCTCGCCAATAGGTGGTGTTCTTGTAATAGGTGCTAACACTGTTCATTATCACAGTCAGTCTGCTTCTTGTTCATTGGCCTTGAACAGCTATGCTGTTTCACCTGACAATAGTCAAGAGATACTGAGATCAAGTTTTAACGTGGAGCTTGATTCTGCCAATGCAACTTGGTTGTTGAGTGATGTGGCCTTGCTGTCTACAAAAACTGGCGAACTGCTATTGCTTACTCTTGTTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACGACCATTGGGAATTGTCTATTTTTTCTCGCCAGTCGGTTAGGGGATAGTATGTTGGTGCAATTTTCTTGTGGATCTGGTGGTTCGTTGTTGTCATCCAATTTAAAAGAAGAGGTCGGTGATATTGAAGTGGATGCTCCATCAAAGAGATTGCGGAGGTCACCTTCTGATACTTTGCAAGACATGGTTAGTGGCGAAGAGCTCTCCTTGTTTGGGTCTGCTCCAAATAGAACAGAATCAGCTCAGAAGTCCTTCTCGTTTGCTGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGACTTCTCATATGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCGAAACAGAGTAACTATGAACTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTCTGTGTGTTTTGCGGCAATCAATTCGTCCAGAAGTGATTACTGAGGTGGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGTTCTCATAATACTGATTCTTCTAAGCTGGCTGATGATGATGATGAGTATCATGCCTATCTTATTATTAGTTTGGAGGCTCGTACAATGGTACTAGAAACAGCCGATCTTCTGAGTGAGGTTACTGAAAGTGTGGACTATTATGTTCAAGGAAAAACACTTGCTGCGGGAAATTTATTTGGAAGGCGTCGAGTTATCCAAGTCTATGAACGTGGGGCTCGAATTCTAGACGGTTCTTTTATGACCCAAGATATAACCTTTGGAGCTTCAAATTCAGAATCTGGTTCTGCTTCTGAGAGTGCCATAGCACTTTCTGTTTCTATAGCTGATCCATTTGTCTTACTCAGAATGAGTGATGGAAGTGTTCGTCTTCTGATTGGAGATCCTATTACCTGCACAATTTCTGTCACTTCACCAGCTTCATTCGAGAGTACCAAGGGATCAGTTTCTTCATGCACACTGTATCATGATAAAGGACCTGAGCCTTGGCTGAGGAAGACTAGTACTGATGCGTGGCTTTCTACTGGTGTTGGCGAGGCTATTGATGGTACTGATGGTGCTGCTCAGGACCATGGGGATATTTATTGTGTTGTTTGTTTTGATAATGGCAACCTTGAAATATTTGATGTCCCCAATTTCAATTGTGTCTTTTCTGTGGAAAATTTTATGTCTGGAAAAAGCCATCTTGTTGATGCTCTGATGAAAGAAGTACTGAAAGATTCTAAAATGGGGGATAGAGATGGAGTGGTCAGCCAAGGGAGGAAGGAAAAGGTACCAGATATGAAGGTTGTAGAGTTGGCTATGCAGAGATGGTCTGGGCAACATAGCCGTCCATTTCTTTTTGGGGTTTTGAGTGATGGAACTATTCTTTGTTACCATGCTTATCTTTATGAAAGTCCAGATGGTACTTCTAAAGTTGAGGATTCAGCATCAGCAGGAGGATCGGTTGGCCTTGGCACTACCAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGCATATTCCAGGGAGGAGACATCTAATGGATCACCTCGTCAACAAATTACTATTTTTAAGAATATTGGTAATTATCAAGGATTCTTCTTATCTGGGTCAAGACCAGCTTGGGTCATGGTGTTGAGGGAACGACTTCGTGTTCATCCACAGCTATGTGATGGATCTATTGTTGCTTTTACTGTACTTCACAACGTGAACTGCAATCATGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGTTCAAACTATGACAGCTACTGGCCTGTACAAAAAATTCCACTAAAAGCCACTCCACACCAAGTAACATATTTTGCTGAGAAGAATTTATATCCACTTATTGTCTCGTTTCCAGTTCTTAAGCCACTAAATCAAGTTATTTCTTTGGTTGACCAAGATGTCAACCATCAGAATGAGGGTCAGAATATGAATTCTGATGATCAAAATCGATTTTATCCTATTGATGAATTTGAGGTTCGAATTATGGAGCCAGAAAAGTCTGGTGGACCTTGGCAAACAAAAGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTCACTGTGAGGATGGTTACGCTGCTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGGACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGCATCCTCCTTTTTTCTTTGGGGAAAAATACTGATAATCCACAATCTCTGGTTTCAGAGGTGTATTCAAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAGGGCCATCTATTAATAGCGTCTGGTCCAAAAATTATTCTGCACAAGTGGAATGGCACCGAGTTGAATGGTAAAGAACTTCATCCTTATTGGCGACATCCATAA 3216 0.4167 MQRFQFSSMMILFMDFGREWLHLKRGREQFARGPVVKVDPQGRCGGALVYDLQMIILKATQAGSGLVGDDDALGFSGAVAARVESSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAANLPHDAYKLLAVPSPIGGVLVIGANTVHYHSQSASCSLALNSYAVSPDNSQEILRSSFNVELDSANATWLLSDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGITTIGNCLFFLASRLGDSMLVQFSCGSGGSLLSSNLKEEVGDIEVDAPSKRLRRSPSDTLQDMVSGEELSLFGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNTDSSKLADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDITFGASNSESGSASESAIALSVSIADPFVLLRMSDGSVRLLIGDPITCTISVTSPASFESTKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEIFDVPNFNCVFSVENFMSGKSHLVDALMKEVLKDSKMGDRDGVVSQGRKEKVPDMKVVELAMQRWSGQHSRPFLFGVLSDGTILCYHAYLYESPDGTSKVEDSASAGGSVGLGTTNVSRLRNLRFVRVPLDAYSREETSNGSPRQQITIFKNIGNYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDVNHQNEGQNMNSDDQNRFYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKNTDNPQSLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWNGTELNGKELHPYWRHP 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01186 1071 Pfam CPSF A subunit region 937 1062 IPR004871 GO:0003676|GO:0005634
Vian8g01186 1071 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 33 546 IPR018846 -
Vian8g01186 1071 Gene3D - 16 297 IPR015943 GO:0005515
Vian8g01186 1071 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 26 1056 - -
Vian8g01186 1071 Gene3D - 826 1067 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01186 K14401 - gmx:100785543 1964.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01186 8 30476739 30495705 Vian8g01186 8 30476739 30495705 ECH