Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01184 ATGAGTGGCGGTGTTGATTTGGGTATTAACGGGATTGCGCCGTATCAGACGTTTGATGGAGTGATGGAATTGAAAATGGCCTTGTCAGATTTTATGCATCAGGTGATGGGGGAATCAGTGAAATTTGACCCATATAATATGGTTCTAACAGCTGGAGCAACTCCTGCAATTGAGATATTGTCCTACTGTTTGGCAGACCATGGGAATGCATTCCTTGTCCCTACACCATATTATCCAGGATTTGACAGGGATGTAAGATGGCGTCCAGGGGTAGACCTAATACCTGTTCACTGTCGCAGCACTGACAATTTCAATCTAAGTATCACTGCTCTTGATCAAGCATTTAGTCAAGCAAGAAAACGAGGAGTCAAAATTCGTGGAATTCTAATTTCCAACCCTTCAAATCCCGTTGGCAATATTTTGACACAAGACATGCTATACAGTCTTCTGGACTTTGCTGAAGATAAAAACATTCATATCATTGTTGATGAAGTATATGCAGGCTCCACGTACGGAAGTGAGAAGTTTGTGAGTCTAGCTGAAGTTCTTGATTCAGATATAGACAAAAGCCGGTTTCACATAGTATATTCCCTGTCAAAAGACCTATCTCTTGCTGGATTTAGAGTTGGGGTTATATGTTCATTCAACGACAGTGTTTTGGCTGCTGCCAAGAAGTTGACTAGATTTTCCGCAATATCTGCTCCGACCCAGAGGTTAGTTACTTCAATGCTTTCAGATAAAAGATTTATTCGGGAGTATTTAGAAACCAACCGGAAAAGAATACGACAAGTGCGTGATGAATTTGTGGATTGTTTAAGTAAACTAGGAATCAAGTGTGCCAAGAGCAGTGCTGGTATGTTCTGTTGGGCTAATATGAGTGGATTGATCCGACCATATAGTGAAAAAGGGGAAATTGAGTTGTGGGAGAAGTTTTTAAGTATTGCTAAGATCAGTATAACTCCTGGATCAGCCTGCCATTGCATAGAACCAGGATGGTTTCGAATTTGTTTTACTACCATAACATTAGAGGAGGTCCCTCTGGTTATTAAACGAATTAGGAGAGTTGTTGAAAGTTGTAATTCTTCTAGTTGA 1092 0.4048 MSGGVDLGINGIAPYQTFDGVMELKMALSDFMHQVMGESVKFDPYNMVLTAGATPAIEILSYCLADHGNAFLVPTPYYPGFDRDVRWRPGVDLIPVHCRSTDNFNLSITALDQAFSQARKRGVKIRGILISNPSNPVGNILTQDMLYSLLDFAEDKNIHIIVDEVYAGSTYGSEKFVSLAEVLDSDIDKSRFHIVYSLSKDLSLAGFRVGVICSFNDSVLAAAKKLTRFSAISAPTQRLVTSMLSDKRFIREYLETNRKRIRQVRDEFVDCLSKLGIKCAKSSAGMFCWANMSGLIRPYSEKGEIELWEKFLSIAKISITPGSACHCIEPGWFRICFTTITLEEVPLVIKRIRRVVESCNSSS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01184 363 CDD AAT_like 15 354 - -
Vian8g01184 363 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 11 357 - -
Vian8g01184 363 Gene3D Aspartate Aminotransferase, domain 1 247 351 IPR015422 GO:0003824
Vian8g01184 363 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 197 210 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vian8g01184 363 Gene3D - 12 246 IPR015421 GO:0003824
Vian8g01184 363 Pfam Aminotransferase class I and II 11 352 IPR004839 GO:0009058|GO:0030170
Vian8g01184 363 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 9 25 - -
Vian8g01184 363 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 158 181 - -
Vian8g01184 363 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 46 66 - -
Vian8g01184 363 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 223 246 - -
Vian8g01184 363 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 68 89 - -
Vian8g01184 363 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 122 146 - -
Vian8g01184 363 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 191 215 - -
Vian8g01184 363 SUPERFAMILY PLP-dependent transferases 11 357 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01184 Vian-Chr8 30438500 30441405 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01184 K14270 - gmx:100800539 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01184 8 30438500 30441405 Vian8g01184 8 30438500 30441405 ECH