Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01143 ATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCGACATTGCCAGTTTTTAAAGCACATGGGAAGGCCCAAGCATCTATATCTGACTGTGTGACTGAAACGTTTTCAGCTATTCGAACAGTAAGATCCTTTGGTGGTGAAAAGCGCCAAATGTTCTCTTTTGCTAATCAGGTTCTATCTTTCCAATCTAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCTTTAACTAGAGTTGCAGTTTATATTTCTTTAATAGCATTATACTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAACTCTCTGTTGGAACCATGGCATCTTTTATCGGTTATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTCCGTGGAACTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTTTCTGGGGTTCAAGTTGATGATGCCCTGGCTTATGGCTTAGAAAGAGAACTGAGACAAAAAACAGTGGAGGATGAAAACTATAAATTGGTCTTATCTAATATTTCTACCGAGAATAACCAAAAAAATTATTTTCACTTTATGTCAGCTCTTAAAACATCAAGCAATTTATTTAGCATAGCTTGGTCGGGAGATATTTGCCTTGAAGATGTATATTTCTCTTATCCATTAAGGCCGGATGTGGAAATCTTACGTGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGTCCAAGTGGTGCAGGCAAAAGTACAGTAGTCCAGCTATTGTCTCGTTTTTATGAGCCAACAAGTGGCTGTATAACAGTTGCAGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCGGGTTGTTTCCATTGTAAATCAAGAGCCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAACATTGCATATGGGCTTCCAGATGAAGATGTCTCTAAAGAAGATGTCATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTACCACAGGGCTATGATACACTTGTTGGTGAGCGTGGAGGCCTATTGAGTGGAGGACAGAGACAGAGAATTGCTATAGCCCGCGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCTGTCAGTGAGCGCTTGGTCCAGGAAGCTCTCAACCATTTGATGAAGGGAAGAACCACATTAGTAATAGCCCACCGATTAAGCACAGTCCAAAATGCATACCAAATTGCAGTCTGTTCTGAGGGGAGGATTACAGAATTAGGCACTCATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGGCACACAAAGGCTTGCCTTTGAATAA 1374 0.4134 MLAVSISIAVYKRSTLPVFKAHGKAQASISDCVTETFSAIRTVRSFGGEKRQMFSFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVFSGVQVDDALAYGLERELRQKTVEDENYKLVLSNISTENNQKNYFHFMSALKTSSNLFSIAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPTSGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQEALNHLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRITELGTHFELLAKKGQYASLVGTQRLAFE 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01143 457 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 2 455 IPR039421 -
Vian8g01143 457 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 211 455 - -
Vian8g01143 457 CDD ABC_MTABC3_MDL1_MDL2 213 452 - -
Vian8g01143 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 452 IPR027417 -
Vian8g01143 457 ProSitePatterns ABC transporters family signature. 354 368 IPR017871 GO:0005524|GO:0016887
Vian8g01143 457 Pfam ABC transporter transmembrane region 4 123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g01143 457 SUPERFAMILY ABC transporter transmembrane region 4 148 IPR036640 GO:0005524|GO:0016020
Vian8g01143 457 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 213 451 IPR003439 GO:0005524
Vian8g01143 457 Gene3D - 210 453 IPR027417 -
Vian8g01143 457 SMART AAA_5 240 414 IPR003593 GO:0016887
Vian8g01143 457 Pfam ABC transporter 231 382 IPR003439 GO:0005524
Vian8g01143 457 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 136 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g01143 457 Gene3D ABC transporter type 1, transmembrane domain 1 149 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01143 Vian-Chr8 29790414 29798216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01143 210 457 Calmodulin-binding Proteins AT2G36910 55.378 2.52e-79 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01143 K05657 - gmx:100791034 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01143 8 29790414 29798216 Vian8g01143 8 29790414 29798216 ECH