Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01139 ATGATCTCCATGCTCTTCCTTGGCCACCTTGGAGAGCTTGCTTTGGCTGGTGGCTCACTTGCTGTTGGCTTTGCCAACATCACTGGCTACTCAATCTTGTCTGGTCTTGCTGTCGGAATGGAGCCAATCTGTGGCCAAGCTTTTGGTGCCAAGAGGTTCACCCTACTTGGCCTCTGCTTGCAAAGAACCATTCTTCTTCTCCTCTTCACTTCCCTCCCCATATCACTCCTTTGGCTCCACATGAAGAAAATTCTTCTCCTTTGTGGCCAGGATGAGTCCATAGCCACACAGGCTCAATCGTATCTTGTTTACTCCATTCCTGACCTCATAGCACAATCTTTCTTGCATCCTATGAGAATTTACCTCAGGAGTCAATCCATTACCCTCCCTCTCACCCTCTGTGCCTCCCTGTCAATCCTCCTTCACATACCCATAAACTACTTCCTTGTGTCACACCTCGGGCTGGGAATCAAAGGGGTGGCTCTTGGTGGGGTGTGGACAAACTTCAACCTCGTGGCTTCTTTGATTCTTTATATAGTCTTCTCTGGCACTTACAAGAAAACATGGGGTGGTTTCTCTTTTGAGTGCTTCACACAGTGGAGGTCTCTTCTCAATTTGGCTATTCCGAGCTGTGTTTCGGTGTGTTTGGAGTGGTGGTGGTATGAGATCATGATTCTGTTATGTGGGCTGTTGGTGAACCCCAGAGCAACCGTGGCCTCAATGGGAATTCTGATCCAAACCACTTCTTTGCTTTACATTTTCCCTTCTTCATTGAGCTTCAGTGTTTCAACAAGAGTTGGCAACAAGCTTGGCGCACAGAAGCCCTCAAAGGCAAGGCTTTCTGCCATTGTGGGGTTATCCTGCAGCTTCGTGTCAGGTGTCCTGGCATTGGTTTTTGCTCTCATGGTTAGGAACACATGGGCTAGCATGTTCACAAAGGACAAGGAGATCATAACTCTGACATCTATGGTGTTACCCATAATAGGCCTTTGTGAGCTTGGGAATTGCCCTCAAACAACAGGGTGTGGGGTGCTGAGAGGCACAGCAAGGCCTAAAATCGGTGCTAACATCAACCTGGGATGTTTCTACCTTGTGGGAATGCCTGTGTCCGTTTGGCTAGCTTTCTTCACTGGCTATGACTTTCAAGGCCTCTGGCTTGGGCTTCTTGCAGCTCAAGGGTCTTGTGCAGTGACCATGTTGGTGGTTCTGTGCAGAACTGATTGGGAATCTGAGGCCCAAAGAGCCAAGAAACTCACAGGAATGGGTGAAGCTTGTGGTGTTGATGATCACAAACGTGAGGTTGATCCAGAGAAGCCACTCAAATGCGAAAGCACGGAAGATTCTTTGGCATTATTAGCTGACTCAGATGAAAATGAACAGTGA 1383 0.4816 MISMLFLGHLGELALAGGSLAVGFANITGYSILSGLAVGMEPICGQAFGAKRFTLLGLCLQRTILLLLFTSLPISLLWLHMKKILLLCGQDESIATQAQSYLVYSIPDLIAQSFLHPMRIYLRSQSITLPLTLCASLSILLHIPINYFLVSHLGLGIKGVALGGVWTNFNLVASLILYIVFSGTYKKTWGGFSFECFTQWRSLLNLAIPSCVSVCLEWWWYEIMILLCGLLVNPRATVASMGILIQTTSLLYIFPSSLSFSVSTRVGNKLGAQKPSKARLSAIVGLSCSFVSGVLALVFALMVRNTWASMFTKDKEIITLTSMVLPIIGLCELGNCPQTTGCGVLRGTARPKIGANINLGCFYLVGMPVSVWLAFFTGYDFQGLWLGLLAAQGSCAVTMLVVLCRTDWESEAQRAKKLTGMGEACGVDDHKREVDPEKPLKCESTEDSLALLADSDENEQ 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01139 460 Pfam MatE 1 148 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian8g01139 460 Pfam MatE 209 371 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian8g01139 460 CDD MATE_eukaryotic 1 414 IPR045069 GO:0042910|GO:1990961
Vian8g01139 460 NCBIfam MATE family efflux transporter 1 385 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian8g01139 460 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01139 Vian-Chr8 29662369 29663751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01139 K03327 - gmx:100787316 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01139 8 29662369 29663751 Vian8g01139 8 29662369 29663751 ECH