Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01116 ATGCGAGGCTTCGCTTGTCGAGCCTCCAACTTCTTCAAGCGCAATCTCGATAATTTCCCTTATAACCCTAATTTCAACTTCTTCAGAGAATTCGCGCAATCCACCGCAATCCCCAAAAAGCAACTTAGGGTTCGTGACCACGGCTACGACAACTACATGGAAGTGGAGAAGAAAACGCGCAAGGTCCTCAAATTTCAGAGCATCATCCTCCCCGAGCCCACCCAATCGCTCCCAATCTCGCGCCTCGAAAACCTCGTGCGCCGCTTCGGTTTCACGCGCTACGAGGCTGGTGCGTTCGTCCTTAAGTTCCCGCACGTCTTCGAAATCTTTGAGCACCCCGTCCAGCGCATTCTCTTCTGCCGCCTCACCCGCAAAGCCATCCTCCAGATTCAGCAGGAGCGCCAAGCACTCGCGGAACAGATTCCACGCGCCGTCACGCGGCTTCGGAAGCTTCTGCTGATGACGAACGAAGGCAGGCTCCGCCTCGAGCATGTGCGCATTGCACGCTCCGCCTTCGGCCTTCCCGACGACTTCGAAAACTCTGTGGTTCTGAGGTACCCTCAGTTTTTCCGTTTGATTGATGCAAAGGAAACTAGGATGAAGTACATTGAGGTTGTGGAGAGGGACCCTAGGTTATCAACTTGTGCGATTGAGGAGGTTAGGGAGAGGGAGTATAGAGAGAGAGGTGGTGATGCTGAGGATGTTAGATTTTCTTTTGTCATTGATTTTCCACCTGGTTTTAAGATAGGTAAGTATTTTAGGATTGCAATGTGGAAGTGGCAGAGGCTTCCTTATTGGTCCCCGTATGAGGATGTTTCTGGGTATGATTTGAGGTCCATTGAAGCCCAGAAGAGGATGGAGAAGAGAGCTGTTGCCACCATTCATGAGTTGTTGTCGTTGACTGTGGAGAAGAAAATTACATTGGAGCGGATCGCACATTTCCGAATGGCGATGAACCTGCCCAAGAGGTTGAAGGATTTCCTGCTCCAGCACCAAGGTATTTTCTATGTCTCCACCAGGGGGAATCAGGGGAAGCTTCACACTGTTTTCCTTAGGGAGGCGTATAGAAAAGGCGAGCTGATTGAGCCGAATGAGTTGTATTTGGCACGGAGGAAGCTAGCTGAGCTTGTGCTATTGAGTCCAAGGAAAGCCAAGGTTGATAAGGAGTTGGTTGGGTACAGGAGAAGCAGGTTAGAGGACGAAATGGGGCATGTAACGAGGACATATGTGGAGGATGCTTGTGAAGACTTTAAGGGGGAAGATGGTGTGGGTCTGGATAAAGATGCAGAGGATGATTTGACGTCAGATATAGGTTCTGATGTTGATTTGGGAGATGAGGGTGATGATTTTGTGGATAGTGCATCACTGCAAAGGACATCATAG 1383 0.4996 MRGFACRASNFFKRNLDNFPYNPNFNFFREFAQSTAIPKKQLRVRDHGYDNYMEVEKKTRKVLKFQSIILPEPTQSLPISRLENLVRRFGFTRYEAGAFVLKFPHVFEIFEHPVQRILFCRLTRKAILQIQQERQALAEQIPRAVTRLRKLLLMTNEGRLRLEHVRIARSAFGLPDDFENSVVLRYPQFFRLIDAKETRMKYIEVVERDPRLSTCAIEEVREREYRERGGDAEDVRFSFVIDFPPGFKIGKYFRIAMWKWQRLPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPKRLKDFLLQHQGIFYVSTRGNQGKLHTVFLREAYRKGELIEPNELYLARRKLAELVLLSPRKAKVDKELVGYRRSRLEDEMGHVTRTYVEDACEDFKGEDGVGLDKDAEDDLTSDIGSDVDLGDEGDDFVDSASLQRTS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01116 460 Pfam Plant organelle RNA recognition domain 44 380 IPR021099 GO:0003723
Vian8g01116 460 MobiDBLite consensus disorder prediction 421 460 - -
Vian8g01116 460 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 32 399 IPR045040 GO:0003723
Vian8g01116 460 MobiDBLite consensus disorder prediction 435 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01116 Vian-Chr8 29340293 29341675 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01116 - - gmx:100782167 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01116 8 29340293 29341675 Vian8g01116 8 29340293 29341675 ECH