Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01115 ATGGGGAATTCATTTGGGTGCTCGGCTTCCGGTGAGAGGTTGGTGTCAGCGGCGAGAGACGGCGATTTGGTTGAGGCAAAGATGCTTCTAGAATGCAACCCTGGTCTTGCAAAGTACTCCACTTTTGGGGGCCTCAATTCGCCTCTTCATTTTGCAGCTTCTAAAGGCCATAATGAGATTGTGGCATTGCTGCTTGAAAATGGAGCTGATGTGAATTCAAGAAATTATTGTGGGCAGGTGAACTTCGGTGTTGGAAGATTTTGGTTTGCTTTAATCCTTGATCTGAAGACGGCATTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAAACTCTTCTGCTCTTCAGATGTAATGTTATGAAAGCAGATTATCTCAGTGGGAGGACAGCTCTACACTTTGCAGCCATCAATGGACATGCAAGATGCATCAGACTTGTTGTTGCAGATTTTGTTCCAAGTGCTCCTTTTGAATCTTTACATGCTCGCATGGACGCAGAAATTGATGGATCAAATGTGAAAAACACACATGAACAAAGTGTGCTGTCGAGGTTTGTAAATAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTGATGCTAATGTGTCAGCTGCAACATTTCATTATGGAACCTCAATGGATTTAATTGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTGAAATGCTATCCTCCTCGCAAGAGGTGCCAGTCGGATGGCTTTGAATTGCAATGGGTAGGTTACTTTAAATGGAGATTTCAATGGCTTTCACTTGATGTTGCTAGGATGTGGGGTCGTCATTGGCTTGAACCATTGCTGGCACCCACTTCTCAAGCCACAATATTGACATTTCCTTCTTCAAATTATTTGTCCTTGCCTCTTATGAGTGTGCTCAACATTGCCAGAGACTGTGGATTGCAATCAGCTGCAACCTCCTCCAGTGAAGTTGATGTTTGTGCTGTCTGCCTGGAGAGGTCATGTTCTGTGGCTGCTGAAGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACGAGCAATGTTTCTTCTGAAACTTGTGGTCCTCCTGGCTCTATCCCTTGCCCTCTTTGCAGACATGGAATTGTCTCTTTTGTGAAGTTACCAGGTTCCCAAGCAAAAGAAAACAAAATGCATGTGTCTCTCAGCCTGTGTACCCCATGCATGCTACACCCACGTGACCAAGATAACTCTTCTGTTTCTCATACCCCTGAGATTCGAAGGAACCGTGTAGCTTCAGTTCCATCAGAGATGCTTTGCCCCGTCACTTGTACTCCATTTCCTTCTGTAGCTATTCCTCTGTGCACTTGCAATGATGGTCCTTGCCCTACATTTGAATCCCGGGAAGCAGCAACGCGAGATGAACCGGTTCGCCGGTCGCAAGCATCCTCGACGATGGATCCAGATAAAATGGAAGGTCCAAGGCTAGATAAGACAACATGTTCAGGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1611 0.45 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPGLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQVNFGVGRFWFALILDLKTALMQACRYGHWEVVQTLLLFRCNVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPFESLHARMDAEIDGSNVKNTHEQSVLSRFVNKTADAGITALHMAALNGYFDCVQLLLDLDANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCYPPRKRCQSDGFELQWVGYFKWRFQWLSLDVARMWGRHWLEPLLAPTSQATILTFPSSNYLSLPLMSVLNIARDCGLQSAATSSSEVDVCAVCLERSCSVAAEGCGHELCVRCALYLCSTSNVSSETCGPPGSIPCPLCRHGIVSFVKLPGSQAKENKMHVSLSLCTPCMLHPRDQDNSSVSHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPTFESREAATRDEPVRRSQASSTMDPDKMEGPRLDKTTCSGMFWGRRSCSREHQCNSEINA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01115 536 ProSiteProfiles Ankyrin repeat profile. 128 149 IPR002110 GO:0005515
Vian8g01115 536 ProSiteProfiles Ankyrin repeat profile. 193 225 IPR002110 GO:0005515
Vian8g01115 536 PANTHER MYOTROPHIN 96 250 - -
Vian8g01115 536 SUPERFAMILY RING/U-box 341 398 - -
Vian8g01115 536 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
Vian8g01115 536 MobiDBLite consensus disorder prediction 481 510 - -
Vian8g01115 536 ProSiteProfiles Ankyrin repeat region circular profile. 128 149 - -
Vian8g01115 536 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Vian8g01115 536 SMART ANK_2a 128 159 IPR002110 GO:0005515
Vian8g01115 536 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vian8g01115 536 SMART ANK_2a 193 222 IPR002110 GO:0005515
Vian8g01115 536 SMART ANK_2a 94 123 IPR002110 GO:0005515
Vian8g01115 536 Pfam Ankyrin repeats (3 copies) 14 75 IPR002110 GO:0005515
Vian8g01115 536 Pfam Ankyrin repeats (3 copies) 96 149 IPR002110 GO:0005515
Vian8g01115 536 Pfam Ankyrin repeats (3 copies) 182 252 IPR002110 GO:0005515
Vian8g01115 536 ProSiteProfiles Zinc finger RING-type profile. 342 392 IPR001841 -
Vian8g01115 536 Gene3D - 4 158 IPR036770 -
Vian8g01115 536 Gene3D - 159 253 IPR036770 -
Vian8g01115 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 413 IPR013083 -
Vian8g01115 536 SUPERFAMILY Ankyrin repeat 14 252 IPR036770 -
Vian8g01115 536 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Vian8g01115 536 ProSiteProfiles Ankyrin repeat region circular profile. 193 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01115 Vian-Chr8 29309338 29321487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01115 10 214 Miscellaneous Gene Families AT1G07710 30.734 4.31e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01115 K19044 - gmx:100812809 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01115 8 29309338 29321487 Vian8g01115 8 29309338 29321487 ECH
Vian8g01115 8 29309338 29321487 Vian3g00610 3 6154827 6159139 PCT