Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01063 ATGGGAACATCAGTGCAGGTAACGCCACTGTGTGGAGTGTACAATGAGAACCCTCTCTCGTATTTGGTCTCCATTGATGGCTTCAACTTCCTCGTCGACTGTGGCTGGAACGACCAATTCGACCCCTCACTCCTTCAACCCCTCTCCAGGGTAGCATCAACCATTGATGCTGTCTTGCTTTCACATGCTGATACACTTCACCTTGGTGCCCTCCCATATGCCATTAAGCAGCTCGGACTCTCTGCCCCGGTTTATTCAACTGAACCTGTCTTCAGATTGGGCCTTCTCACTATGTATGACCAGTACCTTTCAAGAAAGCAAGTGTCGGAATTCGATCTGTTCACATTGGATGATATTGATTCTGCTTTCCAGAGTGTAACGAGGCTAACATATTCTCAGAATCATCATCTGTCAGGCAAAGGAGAAGGAATTGTGATTGCTCCTCATGTTGCTGGACATCTTTTGGGAGGTACTGTTTGGAAAATTACAAAGGATGGTGAGGATGTCATATATGCTGTTGATTTTAATCACAGGAAAGAAAGGCATTTGAATGGAACTGCTCTTGGTTCTTTTGTGCGGCCTGCTGTTCTAATAACTGATGCTTACAATGCTTTGAACAATCAGCCTTACAGACGTCAAAAGGACAAAGAATTTGGAGATATCTTAAAGAAGACTCTAAGAGCAGGTGGCAATGTATTACTACCTGTTGACACTGCTGGACGAGTGTTGGAACTTATTCTGTTGTTGGAATCGTATTGGTCTGATGAAAACTTGAACTACCCTATATACTTTCTTACATATGTTGCTTCCAGCACAATTGATTACGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCAAAGTCTTTTGAAAAAACTCGTGAAAATATTTTTCTTCTGAAGTATGTTACCCTTCTGATTAACAAGACTGACCTTGACAATGCTCCAGAGGGTCCAAAGGTGGTTCTAGCATCCATGGCAAGTTTGGAAGCAGGCTTTTCTCATGATATATTTGTTGAGTGGGCCAATGATTCAAAAAATCTTGTGCTTTTTACTGAAAGAGGCCAGTTTGCCACACTAGCTCGTATGCTCCAAGCTGATCCACCACCAAAAGCTGTCAAAGTTGTTGTGTCCAAGCGAGTTCCTTTGGTTGGGGAAGAGCTTATTGCCTACGAAGAAGAGCAAGATCGAATAAAAAAAGAAGCTTTAAAAGCCAGTCTTATGAAAGAGGAAGAATTGAAAACATCTCATGGGTCTGAGAATAATAATAGTGATCCAATGGTCATTGATTCTGGCAATAATCATGTACCACCAGAAGTGGCTGGTCCACGAGGTGGAGGATACCGGGATATATTTATTGATGGATTTGTTCCCCCTTCCACGAGTGTTGCTCCAATGTTTCCCTGTTATGAGAATACATCAGAATGGGATGATTTTGGAGAAGTCATAAATCCAGATGATTATGTAATTAAGGATGAAGACATGAATCAGATTGCAATGCACGGAGGTGGTGATATAAATGGAAAACTTGATGAAGGTGCTGCAGGTTTAATACTTGATACAAAGCCATCAAAAGTTGTATCTGATGAAAGGACTGTGCAAGTTAAGTGTGTATTGGTTTACATGGATTTTGAAGGACGTTCAGATGGAAGATCCATCAAAAATATTCTATCTCATGTGGCTCCCTTGAAGCTGGTTTTGGTGCATGGGTCAGCAGAAGCTACAGAGCATCTGAAGCAGCACTGCCTGAAGCATGTTTGTCCTCACGTTTATGCTCCCCAAATTGATGAGACAATTGATGTGACCTCTGATTTATGTGCTTACAAGGTTCAACTATCTGAGAAGCTAATGAGTAATGTACTCTTCAAAAAGCTGGGAGATTATGAAGTAGCTTGGGTAGATGCTGTAGTAGGGAAGACAGAAAACGACATGCTTTCTCTGCTCCCTGTTTCTGAAGCGGCTCCTCCACATAAGTCTGTTCTTGTTGGTGATTTGAAATTGGCAGATATCAAACAGTTTCTCTCTGGCAAGGGTGTTCAGGTGGAGTTTGCTGGTGGAGCTTTACGTTGTGGTGAATACGTAACTCTTCGGAAAGTTGGCGATGCAACTCAGAAGGGTGGTGGTTCTGGTGCTCAGCAAATTGTTATTGAAGGTCCTCTGTGTGAAGATTACTATAAAATTCGTGACTATCTCTATTCACAATTTTATTTGCTTTAG 2220 0.4194 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDQFDPSLLQPLSRVASTIDAVLLSHADTLHLGALPYAIKQLGLSAPVYSTEPVFRLGLLTMYDQYLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAGRVLELILLLESYWSDENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEKTRENIFLLKYVTLLINKTDLDNAPEGPKVVLASMASLEAGFSHDIFVEWANDSKNLVLFTERGQFATLARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQDRIKKEALKASLMKEEELKTSHGSENNNSDPMVIDSGNNHVPPEVAGPRGGGYRDIFIDGFVPPSTSVAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMNQIAMHGGGDINGKLDEGAAGLILDTKPSKVVSDERTVQVKCVLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIDETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAVVGKTENDMLSLLPVSEAAPPHKSVLVGDLKLADIKQFLSGKGVQVEFAGGALRCGEYVTLRKVGDATQKGGGSGAQQIVIEGPLCEDYYKIRDYLYSQFYLL 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01063 739 SMART Beta_Casp_2 242 365 IPR022712 -
Vian8g01063 739 Pfam Cleavage and polyadenylation factor 2 C-terminal 643 736 IPR025069 -
Vian8g01063 739 SMART Lactamase_B_5a 17 230 IPR001279 -
Vian8g01063 739 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Vian8g01063 739 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 738 IPR027075 GO:0005847|GO:0006378|GO:0006379
Vian8g01063 739 Pfam Beta-Casp domain 242 365 IPR022712 -
Vian8g01063 739 Gene3D - 7 257 IPR036866 -
Vian8g01063 739 FunFam Cleavage and polyadenylation specificity factor subunit 2 6 255 - -
Vian8g01063 739 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 602 IPR036866 -
Vian8g01063 739 Pfam Metallo-beta-lactamase superfamily domain 22 189 IPR001279 -
Vian8g01063 739 MobiDBLite consensus disorder prediction 411 435 - -
Vian8g01063 739 Coils Coil 392 412 - -
Vian8g01063 739 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 533 584 IPR011108 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01063 K14402 - gmx:100777002 1402.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01063 8 28013729 28023589 Vian8g01063 8 28013729 28023589 ECH