Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01056 ATGAAATCCTACATCTGGCTTCAAACTGTGGATGGCTCTATTCATCAAGTAGAGGAAGAGGTAGCCATGTTTTGCCCCATGATTTGCCAGGAAGTACTTCAAACAGGCATGGGATCTTCCAAAACTTGTGCTATATCTCTTCCACATCATGTCAATCCTGCAATCTTGGATTTGATACTTGATTACTGTCGGTTTCACCAAGTACCAGGACATTCTAACAAGGAGCTCAAAATTTTCAACGAGAAGTTTGTTCGGATAGATACAAAGAAGTTATGTGAGTTGACATCTGCTGCTGACAGCCTCCAACTGAAGCCTTTGGTTGACCTGACCAGTCGAGCCCTTGCTAGGATTATTGAAGGAAAAACTCCTGAGGAGATTCGTGAAACATTTCATCTGCCTGATGACCTGACTGAGGAAGAGAAGCTGGAGCCTCTGAGAAACGTAACTGATGATCCACGTATTCGACTTCTAAACAGATTGTATGCTAGAAAGAGGAAAGAACTACAAGAGAAAAAGAAGCTGAAGGATGTTGCGGTTGAGGAGGAACCAAAGGATGAGCGTTCAGTTGAAGATCTTCTATCATTTATTAATGGCGCAGATGGAGATATAAAGGGAACTAGAGCAAGTAAAAATAAAAAGAAGAATAGAAGGAAAGACCAGGCAAAGGATCTTTCTTCAAAAAATGCAAATGAAAACAATAAGGGGTTGAATCTTCTTCCTTCTGCATATCACAATGTCAATTTTGACAAGTCCTTAGAGGCCTCTGCAAGCAAACACTCAAGGATGCAAACCATTCCAGCTGTTAATTTTTCTCCAAAATTTGAATTTATTGATAGTGATGTTGACGATGATTTAGATCCTGCTGTGAAGGAGGAGCTTGACAGGGAAGTGGAAGATTTTGCGCGAAGATTGAATTCAGATTGGCCTGAAAGGATGCAAATTTTATCTTTGGGTCAGGACAGAAGACTGGTACCAATTTCTGTGAATGGCAATGGTTCAACGCACCTGTACACGAGTCTGTGTTGA 1026 0.4103 MKSYIWLQTVDGSIHQVEEEVAMFCPMICQEVLQTGMGSSKTCAISLPHHVNPAILDLILDYCRFHQVPGHSNKELKIFNEKFVRIDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNVTDDPRIRLLNRLYARKRKELQEKKKLKDVAVEEEPKDERSVEDLLSFINGADGDIKGTRASKNKKKNRRKDQAKDLSSKNANENNKGLNLLPSAYHNVNFDKSLEASASKHSRMQTIPAVNFSPKFEFIDSDVDDDLDPAVKEELDREVEDFARRLNSDWPERMQILSLGQDRRLVPISVNGNGSTHLYTSLC 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01056 341 Pfam Skp1 family, dimerisation domain 104 141 IPR016072 GO:0006511
Vian8g01056 341 FunFam SKP1-like protein 21 isoform X1 1 149 - -
Vian8g01056 341 SUPERFAMILY POZ domain 3 67 IPR011333 -
Vian8g01056 341 Coils Coil 154 181 - -
Vian8g01056 341 PANTHER SKP1 2 142 IPR016897 GO:0006511
Vian8g01056 341 MobiDBLite consensus disorder prediction 203 239 - -
Vian8g01056 341 Pfam Skp1 family, tetramerisation domain 5 67 IPR016073 GO:0006511
Vian8g01056 341 SUPERFAMILY Skp1 dimerisation domain-like 77 145 IPR036296 GO:0006511
Vian8g01056 341 Gene3D Potassium Channel Kv1.1; Chain A 1 148 IPR011333 -
Vian8g01056 341 SMART skp1_3 2 103 IPR001232 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01056 Vian-Chr8 27895863 27899853 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01056 - - gmx:100808004 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01056 8 27895863 27899853 Vian8g01056 8 27895863 27899853 ECH