Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01052 ATGAGCAGAAGAAAGGTTTCTGGGTTTTCATCTGCTTCAACTGCTGAACAAGTTACTGAAGGAATCGATGCCACTGCCCTCACTGCTATTGTTACAGGTGCAACGAGTGGTATTGGCACTGAAACTGCTCGTGTTCTTGCGATGCGTGGTGTTCATGTAATAATGGCGGTCAGAAATTTGGTTACTGCAAAAGATGTAAAAGAAGCAATACTTAAAGAGATTCCTACTGCTAAACTTGATTACATGGAGTTAGACCTTAGTTCAATGGCATCTGTTCGAAAATTTGCATCGGACTTCATTTCATCTCGCCTTCCATTGAACATTCTTGTAAACAATGCAGGAATATTTGGAACCCCTTTCACGCTGTCTGAGGACAATATTGAACTGCAATTTGCTACGAATCATATAGGGCATTTTCTTTTAACAAATCTGTTGTTAGATACTATGAAGAAAACAGCACATGAAAGTAAGCGAGAAGGAAGAATTGTTAATGTCACCTCTTGTGCTCATCGATTATCCTATCGTGGAGGAATCCGTTTCGATAAAATTAATGATGAATCAAGTTATAGGAAGTTTTGTGCATATGCTCAGTCAAAGCTTGCTAACGTTTTACATGCCAATGAACTTGCAAGACGTCTTAAGGAAGATGGAGTAGATATTAATGCTAATTCTGTTCATCCAGGAGCCATTATCACCAATATTGATCGTTACTACGTTCACTCTGGACTTGCAGCTATACTTAAGAAGTTGATAGGTTTTGCATTTAAAAATGTCGAACGGGGAGCATCAACAACGTGTTATGTAGCATTGCACCCTGAAGTTAAGGGAATTAGTGGAGAGTATTTTGCAGATAATAGAATGGCGAAAGTAGGGTCAAAAGGAAGGGATATTGAGTTGGCTAAGAAACTCTGGGATTTCAGCATGAATTTGATCAACTGA 939 0.3898 MSRRKVSGFSSASTAEQVTEGIDATALTAIVTGATSGIGTETARVLAMRGVHVIMAVRNLVTAKDVKEAILKEIPTAKLDYMELDLSSMASVRKFASDFISSRLPLNILVNNAGIFGTPFTLSEDNIELQFATNHIGHFLLTNLLLDTMKKTAHESKREGRIVNVTSCAHRLSYRGGIRFDKINDESSYRKFCAYAQSKLANVLHANELARRLKEDGVDINANSVHPGAIITNIDRYYVHSGLAAILKKLIGFAFKNVERGASTTCYVALHPEVKGISGEYFADNRMAKVGSKGRDIELAKKLWDFSMNLIN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01052 312 Gene3D - 19 312 - -
Vian8g01052 312 PRINTS Glucose/ribitol dehydrogenase family signature 104 115 IPR002347 -
Vian8g01052 312 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Vian8g01052 312 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Vian8g01052 312 PRINTS Glucose/ribitol dehydrogenase family signature 195 214 IPR002347 -
Vian8g01052 312 PRINTS Glucose/ribitol dehydrogenase family signature 28 45 IPR002347 -
Vian8g01052 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Vian8g01052 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 104 115 IPR002347 -
Vian8g01052 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 195 214 IPR002347 -
Vian8g01052 312 CDD retinol-DH_like_SDR_c_like 28 304 - -
Vian8g01052 312 PANTHER RETINOL DEHYDROGENASE 7 311 - -
Vian8g01052 312 Pfam short chain dehydrogenase 28 174 IPR002347 -
Vian8g01052 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 288 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01052 Vian-Chr8 27814348 27820000 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01052 30 285 Acyl Lipid Metabolism Gene Families AT1G63380 25.556 1.67e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01052 - - gmx:100793843 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01052 8 27814348 27820000 Vian8g01052 8 27814348 27820000 ECH