Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01049 ATGTGCCCATTCAATAGAAGAGGAGTTTCTGGATTTTCATGGTCTTCCACTGCTGAAGAAGTTACTCTCGGAATAGACGGCACTGCTCTTACTGCTATTGTTACTGGTGCATCAAGCGGTATAGGTGCAGAGACAGCTCGTGTTCTTGCATTGCGTGGAGTGCATGTGATAATGGGAGTGATTGATATGATGGATGCTTATAATGTTAAGGATTCAATACTTAAACAAATTCCCACTGCTAAACTTGATGTCATGAAGTTGGATCTAAGTTCAATGGCTTCTGTTCATCATTTTGTAGTTCGGTTTAATTCAACTGCTCTTCCATTGAATATTTTGATAAACAATGCAGGGATTTGTGCATGCCCTTTCATGCTATCCAACGACAACATTGAACTTCAATTTGCTATAAATTATTTAGGTCATTTTCTCCTAACAAATCTGTTGTTGGAAAATATGAAGAAAACAGCAAGAGAAAGTAAGATTCAAGGAAGAATCCTTAATGTCTCCTCCATGGGCCATAGATTTACTTATCCTAACGGAATCCTTTTTGACAAACTTAACGATCCATCAAGTTACAGCAATTGGCGTGCCTATGGACAATCGAAGCTTGCTAATATTTTACATGTGAATGAACTTGCAAGACGTCTCAAGGAAGATGGAGTGGATATTACTGCTAATTCTCTTCATCCAGGAGCCACTGTCACCAATATTTACCTTCAGAGTCCTCTACTCACAGGTATGTGGAATCTGATAGGGCCATTTGTAATCCATATTCTAGCTGGAAATGTGGTGAAAACTGTGCAGCAGGGAGCTTCGACAACATGCTATGCAGCATTGCACCCAGAAGTAAATGGAATCAGTGGCAAGTATTTTGTAGATAATAATGTTTCAGAAGCATGCTCGCATGGCAGAGACATGAATTTGGCCAAGAAACTGTGGGATTTTAGCATAAACTTGACGAAGCAAAATACAAGAAAAGGACCTTCTGGATTCTCAGCTTCTTCTACTGCCGAGGAAGTTACTCAGGGAATTGATGCCACTGACTTCACTGCCATTGTTACAGGGGCAACAAGTGGTATTGGTGCTGAAACTGCACGCGTGCTTGCATTACGCGGTGTTCATGTTGTTATGGGGATCAGAAATATGGCAGCTGGGGGGGAGATCAAGGAAAGAATACAAAGAGATAACCCATCTGCAAAAATTGACATGATGGAGCTGGACCTTAGCTCACTGGAATCAGTTAGGAAATTTGCAGCACAATTCAAATCTTGTGGTCTTCCTCTGAATATACTTGTGTATAACAGTTTGTCTGCATATGGGCAGTCAAAGCTTGCCAATGTTTTGCATGCCAATGAGCTTGCCAGACGGCTTAAGCAGGAAGAGGGCGCAGAAGTAACTGCAAACTCAGTTAGCCCAGGACCAATTGCCACCAGTCTATTTCGTCATCACAGTTTAATAGATGTGTTTGTTGGTCTACTTGGTAAATATGTGATGAAAAATATCCAGCAGGGAGCAGCAACTACATGTTACGTTGCATTGCATCCACAGTTAAAAGGGTTGAGTGGCCGTTACTTTGCGGATAGTAACTTAGCTGAAGCAAGTTCACAAGCAGTTGATCCAGAGCTGGCAAGGAAACTGTGGGAACATAGCTCAAATTTGGTCAAATCTTGA 1671 0.4147 MCPFNRRGVSGFSWSSTAEEVTLGIDGTALTAIVTGASSGIGAETARVLALRGVHVIMGVIDMMDAYNVKDSILKQIPTAKLDVMKLDLSSMASVHHFVVRFNSTALPLNILINNAGICACPFMLSNDNIELQFAINYLGHFLLTNLLLENMKKTARESKIQGRILNVSSMGHRFTYPNGILFDKLNDPSSYSNWRAYGQSKLANILHVNELARRLKEDGVDITANSLHPGATVTNIYLQSPLLTGMWNLIGPFVIHILAGNVVKTVQQGASTTCYAALHPEVNGISGKYFVDNNVSEACSHGRDMNLAKKLWDFSINLTKQNTRKGPSGFSASSTAEEVTQGIDATDFTAIVTGATSGIGAETARVLALRGVHVVMGIRNMAAGGEIKERIQRDNPSAKIDMMELDLSSLESVRKFAAQFKSCGLPLNILVYNSLSAYGQSKLANVLHANELARRLKQEEGAEVTANSVSPGPIATSLFRHHSLIDVFVGLLGKYVMKNIQQGAATTCYVALHPQLKGLSGRYFADSNLAEASSQAVDPELARKLWEHSSNLVKS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01049 556 Gene3D - 26 325 - -
Vian8g01049 556 Gene3D - 435 556 - -
Vian8g01049 556 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 347 554 IPR036291 -
Vian8g01049 556 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 297 IPR036291 -
Vian8g01049 556 Gene3D - 350 434 - -
Vian8g01049 556 PANTHER RETINOL DEHYDROGENASE 10 320 - -
Vian8g01049 556 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Vian8g01049 556 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Vian8g01049 556 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vian8g01049 556 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vian8g01049 556 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vian8g01049 556 Pfam short chain dehydrogenase 350 434 IPR002347 -
Vian8g01049 556 Pfam short chain dehydrogenase 31 179 IPR002347 -
Vian8g01049 556 CDD retinol-DH_like_SDR_c_like 31 313 - -
Vian8g01049 556 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Vian8g01049 556 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 439 458 IPR002347 -
Vian8g01049 556 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01049 Vian-Chr8 27724471 27735086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01049 33 297 Acyl Lipid Metabolism Gene Families AT3G55290 28.417 1.55e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01049 - - gmx:100776100 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01049 8 27724471 27735086 Vian8g01049 8 27724471 27735086 ECH