Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00606 ATGCATTCATCAACTTTTGGTGTTGAAGGAGCTACTTTGGGGGTTCCAAAACGAAGGGGCTTGGTGGATTTTGTGGACTTCAGAAATGGGAGTGTTTTGAGACGTAGCACAGTGTCCATGACAAAGAATAACACCAATCTTTGCGGGTTGAGACTTGGTTCTGCCACTATGGAAACTAAGCTAATTAGTACCAGTGTTGGTTTTGGTGGCGTTTTTGGGTCGTCCGTTAAGCCCAGATCAGTGAGGGTTATGGCTTCTGATGGAAACATTGAGGATGTTGTACCAACTACCCTTCAAAGCAGATCTTCTGGAACTGTGCTACCATATGTTGGTGTTGCTTGCCTTGGAGCCATTTTATTTGGCTACCATCTTGGGGTGGTAAATGGTGCTCTTGAATACCTTGCAAAGGATCTAGGAATAACTGAAAATACTGTTCTACAAGGCTGGATTGTCAGCACACTTCTCGCTGGTGCCACCGTCGGTTCATTTACTGGTGGATCATTGGCTGACAAATTTGGAAGAACTAGGACTTTTCAATTAGCTGCAATCCCCCTAGCAATTGGAGCATTTCTTAGTGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGGTTACTTGCTGGTGTAGGAATTGGTGTTACATCTGCTATAGTACCATTATACATATCTGAGATTTCACCAACTGAAGTCCGTGGTGCACTAGGTTCTGTTAATCAACTTTTTATATGTATTGGGATTCTTCTGGCACTGGTAGCTGGGTTGCCTTTGGCTGGAAACCCTTTATGGTGGCGGACAATGTTTGGCATTGCAGTAGTTCCATCTGTTCTGTTAGCACTAGGAATGGCAATTTCTCCAGAAAGTCCACGCTGGCTTTTTCAGCAAGGAAAACTCGCTGAAGCTGAAAAGGCTATTAAAACACTTTATGGAAAAGAAAGAGTTGCTACAGTTATGCTTGACTTATCAACAGCTAGTCAAGGTTCATCTGAACCTGAAGCTGGGTGGTTTGATCTGTTTAGTAGCCGATATTGGAAAGTTGTCAGTGTTGGGGCAGCGCTTTTTTTGTTCCAGCAATTGGCTGGAATAAATGCCGTAGTGTATTATTCAACTTCTGTTTTCCGTAGTGCTGGAATTGCGTCTGATGTTGCAGCGAGTGCCTTGGTTGGTGCATCAAATGTTTTTGGAACTGCTATCGCTTCCTCCTTAATGGACAAACAAGGAAGGAAAAGTCTCCTTATCATAAGCTTTAGTGGGATGGCTGCTTCTATGTTGCTTCTTTCTCTGTCTTTTACTTGGAAGGTTCTTGTACCATACTCTGGCACCCTTGCTGTTCTTGGGACTGTTCTCTATGTCCTATCCTTCTCTCTTGGTGCTGGACCTGTGCCTGCCCTTCTTCTACCGGAGATATTTGCTTCCAGAATTAGAGCAAAAGCAGTTTCGTTGTCATTAGGCACACATTGGATCTCCAACTTTGTGATCGGCCTCTACTTCTTGAGTGTTGTAAACAAGTTTGGTATCAGCTCCGTTTACTTGGGTTTCTCTGCTGTCTGTGTTCTTGCTGTTTTATACATAACTGGTAATGTTGTGGAAACAAAGGGTCGATCATTGGAGGAAATAGAACGAGCTCTCAGTTCTTCTGCATGA 1644 0.4373 MHSSTFGVEGATLGVPKRRGLVDFVDFRNGSVLRRSTVSMTKNNTNLCGLRLGSATMETKLISTSVGFGGVFGSSVKPRSVRVMASDGNIEDVVPTTLQSRSSGTVLPYVGVACLGAILFGYHLGVVNGALEYLAKDLGITENTVLQGWIVSTLLAGATVGSFTGGSLADKFGRTRTFQLAAIPLAIGAFLSATAQSVQPMIIGRLLAGVGIGVTSAIVPLYISEISPTEVRGALGSVNQLFICIGILLALVAGLPLAGNPLWWRTMFGIAVVPSVLLALGMAISPESPRWLFQQGKLAEAEKAIKTLYGKERVATVMLDLSTASQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIASDVAASALVGASNVFGTAIASSLMDKQGRKSLLIISFSGMAASMLLLSLSFTWKVLVPYSGTLAVLGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVSLSLGTHWISNFVIGLYFLSVVNKFGISSVYLGFSAVCVLAVLYITGNVVETKGRSLEEIERALSSSA 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00606 547 ProSiteProfiles Major facilitator superfamily (MFS) profile. 109 532 IPR020846 GO:0022857
Vian8g00606 547 PRINTS Sugar transporter signature 202 221 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian8g00606 547 PRINTS Sugar transporter signature 444 465 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian8g00606 547 PRINTS Sugar transporter signature 117 127 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian8g00606 547 PRINTS Sugar transporter signature 357 367 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian8g00606 547 PRINTS Sugar transporter signature 467 479 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian8g00606 547 FunFam Plastidic glucose transporter 4 100 545 - -
Vian8g00606 547 SUPERFAMILY MFS general substrate transporter 99 540 IPR036259 -
Vian8g00606 547 PANTHER PLASTIDIC GLUCOSE TRANSPORTER 4 98 543 - -
Vian8g00606 547 Pfam Sugar (and other) transporter 112 542 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vian8g00606 547 NCBIfam sugar porter family MFS transporter 88 539 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian8g00606 547 ProSitePatterns Sugar transport proteins signature 2. 207 232 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian8g00606 547 CDD MFS_GLUT_like 112 530 - -
Vian8g00606 547 Gene3D MFS general substrate transporter like domains 99 546 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00606 Vian-Chr8 11073438 11086261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00606 1 547 Organic Solute Cotransporters AT5G16150 77.596 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00606 - - gmx:100818957 919.457