Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02070 ATGTGTATGAGATTGGTTCCTAATTATCTTTTCAGGTTTGTTTCTGTTTGTGCAATGGAGAGTGATTCTCGTTCCAGCAAGCAGCGATGCCTTGCTTTTTGGGTTCTGTTTTCCTTGTCAACAATTGTGGAATGGGAACTTTCAGTGTTATTTAACCGTCTCCCATGGTGGCCACATCTGAAATCCATAGCCACTGTCTTGCTGTTGATGCCTTATGTTGGTGCAGCACCATGTGTCTACAGATTCCTAATTAGACCCTACTGTTCTTGGACCCTATTTACAAAGATATCAAACATCGTCAGTGAGAAGGGCACAGATTCTGAATCAGATGAGGGTGCTAAACTTTTTGATGTCTCTGACCAGACAATTACATCAAGTCAAATACAGGAAAAGGAACTTGTTGATTTCTCTTATCAGACAATTACGCCAAGTCAAATACAAGAAAAGAAACTTGAAGCATGTCAGGATGATAGTGCAGGTTGTGACAGAACTGAAAGCAGTTATGCAAGGATAACTAGAAAAAAACTAGTTCAGAAGGAATGGAGCTGTGCTTTATGTCAGATTAGTACTACCAGTGAAAATTGCTTGAGGGCACATCTCAAAGGGAAGAAACACAAGGATAAGGAAACAGAGCTAAGAGTAGAGTTCCATGAAACAAATAGCAAATACCTGTTATCCTCTACTCAGAAAAGAATCAAAGGTATGGTTCTGATAAGGAATCTGAACCAAATTGCTAACATTCTCAACCCAGTTTCCAGATCCATAAGATGGTGTGAGTGGACAAAGCCAAAGTTTGGATGGACAAAACTAAACACTGATGGTTCTATCAACAGAGATAGTGCCAGTTTTGGAGGGCTGCTTCGTGATTATACGGGTGAACCAATATGTGCTTTTGTCTCTAAAGTGCCTCAAGGAGATGTTTTCTTGGTTGAACTGTGGGCCATTTGGAGAGGCCTTGTTCTTTGCTGGGGCCTTGGGATCAAAGCAATATGGGTGGAATCAGACTCCATGAGTGTTGTGAAGACAGTCAATAGAAAACAGCATTGTCCAAAAGCTGATAGCTATTTGAAACAAATCTGGAAACTATTGAAGAAGTTTGATAAATATCAAATTTCTCACTCATGGCGTGAAACTAACAGAGCAGCAGATCATCTTGCTAAGATGGTTGTTTGGGGAAATGATGTGGTTTTGTGGCCAGTTGATTTTCCACCTACCCTTTGCAGTATCATTGAAGATGATGCCAGAGGAAAGAAATACCTCAGACGATGA 1269 0.405 MCMRLVPNYLFRFVSVCAMESDSRSSKQRCLAFWVLFSLSTIVEWELSVLFNRLPWWPHLKSIATVLLLMPYVGAAPCVYRFLIRPYCSWTLFTKISNIVSEKGTDSESDEGAKLFDVSDQTITSSQIQEKELVDFSYQTITPSQIQEKKLEACQDDSAGCDRTESSYARITRKKLVQKEWSCALCQISTTSENCLRAHLKGKKHKDKETELRVEFHETNSKYLLSSTQKRIKGMVLIRNLNQIANILNPVSRSIRWCEWTKPKFGWTKLNTDGSINRDSASFGGLLRDYTGEPICAFVSKVPQGDVFLVELWAIWRGLVLCWGLGIKAIWVESDSMSVVKTVNRKQHCPKADSYLKQIWKLLKKFDKYQISHSWRETNRAADHLAKMVVWGNDVVLWPVDFPPTLCSIIEDDARGKKYLRR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02070 422 Gene3D Classic Zinc Finger 169 219 - -
Vian7g02070 422 Gene3D - 266 390 IPR036397 GO:0003676
Vian7g02070 422 SMART ZnF_U1_5 178 212 IPR003604 GO:0003676|GO:0008270
Vian7g02070 422 Pfam Zinc-finger of C2H2 type 181 205 - -
Vian7g02070 422 SUPERFAMILY Ribonuclease H-like 267 396 IPR012337 -
Vian7g02070 422 Pfam Reverse transcriptase-like 271 388 IPR002156 GO:0003676|GO:0004523
Vian7g02070 422 SUPERFAMILY beta-beta-alpha zinc fingers 173 215 IPR036236 -
Vian7g02070 422 CDD RNase_H_like 270 387 IPR044730 -
Vian7g02070 422 PANTHER OS05G0353850 PROTEIN 247 413 - -
Vian7g02070 422 Pfam TB2/DP1, HVA22 family 14 87 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02070 Vian-Chr7 35100826 35104457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g02070 259 387 Glycoside Hydrolase AT2G33160 27.612 4.93e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g02070 - - gmx:102661917 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g02070 7 35100826 35104457 Vian7g02070 7 35100826 35104457 ECH