Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02055 ATGGCCATGGCACTTCGCAGACTTTCCTCCACCATCAACAAACCGTTCTCCAACGCCACTTCCATTTATCGCACGTCGTCTTCGCTCTCCGCTCACGAAAAAGAGAAATCTCGCGCAGATTGGACGAAGCAGCTCAATGATCCTCTCGAGGTTGTGGATCCCGAGATCGCTGACATAATCGAACTCGAGAAAGCGCGCCAATGGAAGGGATTCGAACTTATTCCTTCCGAAAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACAAATAAATACAGCGAAGGATATCCAGGAGCTAGATACTATGGAGGAAATGATTACGTGCATGATTCGGCGTTTAGGTACATTGACATGGCCGAGACATTATGTCAGAAGCGTGCGCTTGAAGCTTTTCGGTTGGATCCAGCTAAATGGGGAGTCAATGTGCAATCATTATCCGGATCCCCTTCTAACTTTCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCCCTGGATCTTCCCCATGGTGGGCATCTATCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCAATATTCTTTGAAACCATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAGAAAAGTGCAGCACTCTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGGTATGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATATTGTAACAACCACAACACACAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTTTTCAGGAAGGGTGTGAAAGAAATAAACAAGCAAGGGAAGGAAGTGTTGTATGACTATGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTACAGGCTTAGCTGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAGAGCAAGTACTTAGCAACTGCGCAACATTTGCACAGAGTTTGTTAGAGAAAGGCTATGACCTTGTATCTGGTGGAACTGATAACCATTTAGTGTTAGTGAACTTGAGAAACAAGGGCATTGATGGTTCCAGGGTTGAGAAGGTACTAGAAGCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTATCTGCTATGGTTCCTGGTGGCATTCGGATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTTAAAAAAGTAGCTGAATACTTTGATGCAGCTGTCAAGTTAGCCTTACAGATTAAGGAAAATACCAATGGTACAAAGTTGAAGGATTTTGTGACAGCCATGCAATCAGATGAACAAATTCAATCCAAGATTGCTAATCTCCGTCTTGAAGTAGAGGATTATGCTAAGCAATTTCCTACAATTGGTTTTGAGAAAGAGACAATGAAGTATGGTAAGTGA 1560 0.4327 MAMALRRLSSTINKPFSNATSIYRTSSSLSAHEKEKSRADWTKQLNDPLEVVDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNDYVHDSAFRYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQEQVLSNCATFAQSLLEKGYDLVSGGTDNHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEYFDAAVKLALQIKENTNGTKLKDFVTAMQSDEQIQSKIANLRLEVEDYAKQFPTIGFEKETMKYGK 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02055 519 CDD SHMT 52 481 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian7g02055 519 FunFam Serine hydroxymethyltransferase 347 507 - -
Vian7g02055 519 FunFam Serine hydroxymethyltransferase 78 303 - -
Vian7g02055 519 PIRSF SHMT 30 514 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian7g02055 519 Gene3D Aspartate Aminotransferase, domain 1 53 506 IPR015422 GO:0003824
Vian7g02055 519 Pfam Serine hydroxymethyltransferase 49 454 IPR039429 -
Vian7g02055 519 Gene3D - 78 359 IPR015421 GO:0003824
Vian7g02055 519 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 34 512 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian7g02055 519 Coils Coil 484 504 - -
Vian7g02055 519 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 280 296 IPR019798 GO:0030170
Vian7g02055 519 Hamap Serine hydroxymethyltransferase [glyA]. 48 509 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian7g02055 519 SUPERFAMILY PLP-dependent transferases 37 510 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02055 Vian-Chr7 34605951 34614294 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g02055 K00600 - gmx:100816213 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g02055 7 34605951 34614294 Vian7g02055 7 34605951 34614294 ECH