Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g02039 ATGGCTGTTTCAACCAGTTTCTCCGGTGCAAAGTTGGAAGCTTTGCTGCTAAAATGCACTTCCTCCAATGCCACCACCACCATCTCCACCACCCATTTTTCACTTGCCAGAAACAGAAAGACTCTTCTTCAGACTCACAGAGGGGCCATTCGTTGTGAGGTTTCTGCTTCTGATGTTTCTGTTGATCCCACTAAGAAACCTTCCACCCTCTCTGCTCTTGAGCAGCTTAAAACCTCTGCGGCTGACAGGTATACAAAGGAAAAGAGCAGCATCATGGTCATTGGACTGAGTGTGCATACTACACCAGTGGAAATGCGTGAAAAGCTTGCCATACCAGAAGCAGAGTGGCCTAGAGCCATTGCAGAGCTTTGCAGTCTGAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAATCGAATGGAGATATATGTTGTTGCTCTGTCCAAGCACCGTGGAGTCAAAGAAGTCACCGAATGGATGTCCAAAACAAGTGGGATCCCAGTTGCAGATCTTAGCCAGCATCAGTTTCTGCTTTACAACAAAGATGCCACACAGCACATTTTCGAAGTATCTGCGGGTCTTGATTCGCTTGTGTTGGGAGAAGGTCAAATTCTTGCCCAGGTGAAGCAAGTTGTCAAGGTTGGACAAGGAGTGAATGGATTTGGTAGGAACATTAGTGGGCTATTCAAGCATGCAATCACTGTAGGAAAGAGGGTTAGAACTGAGACAAACATTGCTGCCGGTGCTGTTTCTGTGAGTTCAGCAGCTGTTGAACTGGCCTTGATGAAGCTGCCAGAAGCCTCTCATGCAAATGCGAGGATGTTGATCATTGGAGCAGGGAAAATGGGAAAGCTCGTGATCAAGCATTTGGTGGCAAAAGGGTGCACAAAGATGGTTGTTGTGAATAGAAGTGAGGAGAGAGTTGCAGCAATCCGAGAAGAACTGAAGGATGTCGAGATAATCTACAAGCCACTCTCAGAAATGCTGACATGTATTGGTGAGGCAGATGTAGCTTTCACCAGCACAGCATCAGAGACTCCATTGTTCTTGAAGGATGATGTTAAGGATCTTCCTCCTGCCACTGATGAGGTAGGAGGCCGTCGCTTTTTCGTTGATATCTCAGTTCCTAGGAATGTTGGCTCATGTGTCTCAGACCTTGAGTCTGTGAGAGTGTTCAATGTTGATGACCTTAAGGAGGTTGTGGCGGCTAATAAAGAGGACAGGCTAAGAAAAGCCATGGAAGCTCAAGCAATCATCAGTGAAGAATCTAAGCAATTTGAGGCTTGGAGGGACTCATTGGAAACTGTTCCTACCATTAAAAAGTTGAGGGCTTATGCTGAGAGAATAAGGATGGCTGAGCTTGAAAAGTGCCTTGGTAAGATGGGTGATGATATCCCCAAGAAGACACAAAGAGCAGTGGATGATCTTAGCAGAGGTATAGTGAATAAGATGCTTCATGGGCCAATGCAGCACTTGAGGTGTGATGGCAGTGACAGCAGAACTCTAAATGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAACCTTGAGACTGAAGTATCAGTTTTGGAGCAGAAGATTCGAGCCAAGGTGGAGCAAAAGCCATAG 1617 0.4601 MAVSTSFSGAKLEALLLKCTSSNATTTISTTHFSLARNRKTLLQTHRGAIRCEVSASDVSVDPTKKPSTLSALEQLKTSAADRYTKEKSSIMVIGLSVHTTPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSKHRGVKEVTEWMSKTSGIPVADLSQHQFLLYNKDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHANARMLIIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAIREELKDVEIIYKPLSEMLTCIGEADVAFTSTASETPLFLKDDVKDLPPATDEVGGRRFFVDISVPRNVGSCVSDLESVRVFNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFEAWRDSLETVPTIKKLRAYAERIRMAELEKCLGKMGDDIPKKTQRAVDDLSRGIVNKMLHGPMQHLRCDGSDSRTLNETLENMHALNRMFNLETEVSVLEQKIRAKVEQKP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g02039 538 Pfam Shikimate / quinate 5-dehydrogenase 259 401 IPR006151 -
Vian7g02039 538 NCBIfam glutamyl-tRNA reductase 91 500 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vian7g02039 538 Coils Coil 302 322 - -
Vian7g02039 538 FunFam Glutamyl-tRNA reductase 90 249 - -
Vian7g02039 538 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 90 246 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vian7g02039 538 ProSitePatterns Glutamyl-tRNA reductase signature. 187 210 IPR018214 GO:0008883
Vian7g02039 538 Gene3D - 89 249 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vian7g02039 538 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 94 244 IPR015895 GO:0008883|GO:0033014|GO:0050661
Vian7g02039 538 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 415 519 IPR015896 GO:0008883|GO:0033014|GO:0050661
Vian7g02039 538 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 249 409 IPR036291 -
Vian7g02039 538 CDD NAD_bind_Glutamyl_tRNA_reduct 91 413 - -
Vian7g02039 538 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 2 536 - -
Vian7g02039 538 Gene3D - 250 402 - -
Vian7g02039 538 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 413 519 IPR036453 GO:0008883|GO:0033014|GO:0050661
Vian7g02039 538 Hamap Glutamyl-tRNA reductase [hemA]. 90 517 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vian7g02039 538 FunFam Glutamyl-tRNA reductase 249 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g02039 Vian-Chr7 33768242 33770782 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g02039 K02492 - gmx:100815985 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g02039 7 33768242 33770782 Vian7g02039 7 33768242 33770782 ECH