Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01596 ATGGAGGATCGGGATGCCCGCCGGATGGCGACTGCTACTAAGCTATCGGATGTGGTTCTTGACTGTGTGATGCCGTACATCCATGACCCCAAGGACAGGGATGCGGTGTCGCAGGTGTGTCACCGGTGGTACGAGCTCGACTCGCTCACACGGAAGCACGTCACGATTGCGCTCTGCTACACGACCACGCCTGACCGGCTCCGGAGGCGGTTCCCGCACCTAGAGTCGCTGGAGCTGAAAGGGAAGCCCCGGGCAGCTATGTTCAACCTCATACCGGAGGATTGGGGAGGTTTCGTTACACCGTGGGTTAAAGAGATCTCTCAGTACTTCGATTGCTTGAAGTCACTTCACTTTCGCCGCATGATTGTGACAGATTCCGATCTTGAGGTTCTTGCTTGCTCGCGTGGTCACGTACTTCAGGCGCTCAAGCTCGATAAGTGCTCCGGATTCTCCACGGATGGCCTTTATTATATTGGTCGCTTTTGCAGGAATTTGAGAATCTTGCTTTTAGAGGAAAGCTCACTTGTTGAGAATGATGGTGACTGGTTCCATCAGCTTGCTTTGAATAATACAGTTCTTGAGACCCTAAATTTTTACTTGACTGATATTGCCAATGTCAGAATCCAGGACCTTGAACTTATAGCCAGAAACTGCCCCAACTTAAACTCAGTGAAAATTACTGATTGTGAAGTATTAGATTTGGTGAACTTCTTTCGATATGCATCTGCTCTAGAAGAATTTTGTGGAGGTTCCTACAACGAAGAATCAGAGAAGTACGCTGCTATATCATTGCCAGCAAAATTAAGTCGTTTGGGTTTGACATATATTACAAAGAATGAAATGCCCATAGTGTTCCCTTATGCAGCCTTACTGAAAAAATTGGATCTTTTGTATGCAATGCTGGATACAGAGGACCATTGTACGTTAATCCAGAGGTGCCCCAACTTGGAAGTACTTGAGTCAAGGAACGTGATTGGAGACAGAGGATTAGAAGTGCTTGCTCGCTGTTGTAGGAAGCTTAAAAGGCTTCGGATTGAAAGAGGTGACGATGATCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCACAAAGAGGACTGATTGCTTTGTCACATGGCTGTCCAGATCTGGAATATTTGGCCGTTTATGTATCCGACATTTCAAATGCATCTCTAGAACACATTGGTACTCACTTGAAAAACCTTTGTGATTTTCGCCTTGTCTTGCTTGACCGTGAAGAGAAAATAACTGATTTGCCACTTGACAACGGAGTGAGAGCTTTACTGAGGGGTTGTGATAAGCTCAGAAGATTTGCTCTGTATCTGAGACCTGGGGGCTTGACCGATGTGGGACTGGGTTACATAGGACAATACAGCCCAAACGTGAGATGGATGCTTCTAGGGTATGTAGGAGAGACTGACGAAGGGCTGTTGGAATTCTCTAAGGGCTGCCCCAGTCTTCAGAAGCTTGAAATGAGGGGATGCTCCTTTTTTAGTGAGTATGCACTAGCTGTTGCTGCAACTCAACTAACTTCTCTGAGATACCTATGGGTTCAAGGGTATGGAGCATCTCCTTCTGGGCGTGATCTTTTGGCAATGGCTCGGCCCTATTGGAACATTGAGTTGATTCCTTCTAGACGCGTCGTTGTGAACAATCAACAGGAAGAACCTGTAGTTGTTGAGCATCCGGCTCATATTCTTGCATATTACTCCCTTGCTGGCCCAAGAACAGATTTTCCAGATACTGTTATACCTTTGGATACTGCAACATATGTTGACACTTAA 1782 0.4618 MEDRDARRMATATKLSDVVLDCVMPYIHDPKDRDAVSQVCHRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLELKGKPRAAMFNLIPEDWGGFVTPWVKEISQYFDCLKSLHFRRMIVTDSDLEVLACSRGHVLQALKLDKCSGFSTDGLYYIGRFCRNLRILLLEESSLVENDGDWFHQLALNNTVLETLNFYLTDIANVRIQDLELIARNCPNLNSVKITDCEVLDLVNFFRYASALEEFCGGSYNEESEKYAAISLPAKLSRLGLTYITKNEMPIVFPYAALLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRKLKRLRIERGDDDQGMEDEEGVVSQRGLIALSHGCPDLEYLAVYVSDISNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDEGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATQLTSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVVVNNQQEEPVVVEHPAHILAYYSLAGPRTDFPDTVIPLDTATYVDT 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01596 593 SMART LRR_CC_2 483 507 IPR006553 -
Vian7g01596 593 SMART LRR_CC_2 136 161 IPR006553 -
Vian7g01596 593 SMART LRR_CC_2 313 336 IPR006553 -
Vian7g01596 593 SMART LRR_CC_2 373 397 IPR006553 -
Vian7g01596 593 SMART LRR_CC_2 218 237 IPR006553 -
Vian7g01596 593 SMART LRR_CC_2 431 457 IPR006553 -
Vian7g01596 593 FunFam F-box/LRR-repeat protein 4 12 51 - -
Vian7g01596 593 Gene3D - 1 51 - -
Vian7g01596 593 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 31 249 - -
Vian7g01596 593 Pfam F-box 13 53 IPR041567 -
Vian7g01596 593 SUPERFAMILY RNI-like 365 520 - -
Vian7g01596 593 Gene3D Ribonuclease Inhibitor 52 589 IPR032675 -
Vian7g01596 593 FunFam Coronatine-insensitive protein 1 52 588 - -
Vian7g01596 593 Pfam Transport inhibitor response 1 protein domain 72 118 IPR041101 -
Vian7g01596 593 CDD F-box_AtTIR1-like 14 51 - -
Vian7g01596 593 SUPERFAMILY RNI-like 90 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01596 Vian-Chr7 25005107 25009501 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01596 K13463 - gmx:100793081 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01596 7 25005107 25009501 Vian7g01596 7 25005107 25009501 ECH
Vian2g02578 2 46497798 46502091 Vian7g01596 7 25005107 25009501 PCT