Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01570 ATGATGATGAAAAGGTTTACACAGAAGAATATTATCAGGGTGTATCCAAAGGGAACACGTGTTAACTCCTCAAATTACAGGCCACATATAGGATGGATTTACGGAGCTCAGATGGTGGCATTTAACATGCAGGGGCATGGAAAATCACTCTGGTATATGCAAGGGATGTTTAGAGCGAATGGTGGTTGTGGTTATGTGAAAAAGCCTTCATTTCTGATAGAAGAAGGCCCAGATGATGAGGTTTTTGATCCTAAAAAACCAATGCCAGTGCAAAAGACATTGATGGTAAAAGTGTACATGGGAAACGGGTGGAGCACAGATTTCAGTAAAACACACTTCGATGCATTCTCTCCGCCGGACTTTTACACAAAGGTTTGCATTGTTGGAGTACCTGCTGATAAAGTGAATAAGAAGACGAAGATAATTCATGATGATTGGTTTCCCGTTTGGGATGAAGAGTTTGAATTCCCTTTGTGTGTTCCAGAACTAGCTTTACTTTGGATAGAGGTTCGAGAGTACGATATGCATGAAAAGGATGACTTTGGCGGGCAATCATGTTTACCAATCTCTGAGCTAAGATCTGGTTTCCGGGTAATCCCTCTATTTGATGAGAAGGGCGAGCAATTAAAATCTGTAAAGCTTTTAATGCGGTTTCAGTTCAAATGA 666 0.4084 MMMKRFTQKNIIRVYPKGTRVNSSNYRPHIGWIYGAQMVAFNMQGHGKSLWYMQGMFRANGGCGYVKKPSFLIEEGPDDEVFDPKKPMPVQKTLMVKVYMGNGWSTDFSKTHFDAFSPPDFYTKVCIVGVPADKVNKKTKIIHDDWFPVWDEEFEFPLCVPELALLWIEVREYDMHEKDDFGGQSCLPISELRSGFRVIPLFDEKGEQLKSVKLLMRFQFK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01570 221 PRINTS Phospholipase C signature 11 32 IPR001192 GO:0035556
Vian7g01570 221 PRINTS Phospholipase C signature 187 197 IPR001192 GO:0035556
Vian7g01570 221 PRINTS Phospholipase C signature 32 50 IPR001192 GO:0035556
Vian7g01570 221 Pfam C2 domain 93 195 IPR000008 -
Vian7g01570 221 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 4 71 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vian7g01570 221 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 5 72 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vian7g01570 221 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 4 220 IPR001192 GO:0035556
Vian7g01570 221 FunFam Phosphoinositide phospholipase C 88 221 - -
Vian7g01570 221 ProSiteProfiles C2 domain profile. 74 203 IPR000008 -
Vian7g01570 221 SMART plcy_3 2 73 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vian7g01570 221 SUPERFAMILY PLC-like phosphodiesterases 4 84 IPR017946 GO:0006629|GO:0008081
Vian7g01570 221 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 93 220 IPR035892 -
Vian7g01570 221 Gene3D C2 domain 87 221 IPR035892 -
Vian7g01570 221 Gene3D Phosphatidylinositol (PI) phosphodiesterase 1 85 IPR017946 GO:0006629|GO:0008081
Vian7g01570 221 CDD C2_PLC_like 92 221 - -
Vian7g01570 221 SMART C2_3c 93 201 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01570 Vian-Chr7 24626310 24628259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01570 5 221 Acyl Lipid Metabolism Gene Families AT2G40116 73.733 1.21e-122 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01570 K05857 - gmx:547863 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03006 2 50721599 50728816 Vian7g01570 7 24626310 24628259 ECH
Vian7g01570 7 24626310 24628259 Vian7g01570 7 24626310 24628259 ECH
Vian2g03006 2 50721599 50728816 Vian7g01570 7 24626310 24628259 PCT