Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01174 ATGAAGAAAGAGAAGGTTCACATACGGTATTTGGCACCTTGTATTTGGTTACTACTCTCTCTCACTACAATCTTCCTCCCTTTATGTGAGTCCTTCAATTATGGCCACGCCCTGTCCCAGAGCCTACTCTATTTCGAGTCACAGCGTTCAGGACGCTTACCCTACAACCAAAGGGTCACCTGGCGTCACCATTCTGCCCTCACCGATGGCCTAGAACAAGGGGTGGACTTGGTGGGAGGGTACTATGATGCAGGGGACAATGTGAAATTTGGTTTGCCCATGGCCTTCACCGTCACACTCCTCTCCTGGGCTGCTATAGAGTACGGCCAACAAATCGCGGCTGCCGGCGAGTACGCTCACACGCTCGAGGCCATCAAGTGGGGAACTGACTATTTCATTAAGGCACACACACACCCCAATGTTCTTTGGGTTGAGGTGGGTGACGGCCACACTGATCACTACTGTTGGCAGCGGCCGGAGGACATGACGACATCGCGGCGAGCTTACAAGGTGGATGCGGAGAACCCTGGTTCGGATGTGGCCGGTGAGACTGCGGCGGCATTGGCGGCGGCATCCATGGTGTTTAGGAGAACAAAGCCACATTACTCTCAACTACTTTTGCATCATGCAGAACAGTTGTTTGAGTTTGGTGACAAGTACAAGGGGAAGTATGATGAGAGTGTTGGAGTGGCTAAAGAGTATTATGCTTCGGTTAGTGGCTACATGGACGAGTTGCTATGGGCAGCTATTTGGCTTTATAGGGCCACACAAAAGGACCAATATTTAAACTATTTTCTGGAGAATGCTCATGACTTTGGTGGGACCACCTGGGCCATCAATGAATTCAGCTGGGATGTTAAATATGCTGGTGTTCAAGCCATTGCTTCCATGTTATCGATGGAAGAAAAGAAACACAAGCAGCACGAAGTCGTACTCAAACAGTATCGTTCAAAAGCCGAGCACTATCTCTGCGCGTGCCTCAACCTCAACAACGTGAGTAACGTGGAGCGCACCCCAGGAGGGTTACTGTACACCCGCCAATGGAACAACATGCAGTACGTGGCAACGGCGTCGTTTCTTCTCACACTGTATTCTGATCACCTCCGAGCCACACATCAGAATCTGCATTGCGAAAAGGGCGAGGTGGGTCCAGATGAGATGTTTGCCTTTGCGAAATCACAGGTTGATTACATCTTAGGTTCTAATCCAATGGGTATGAGTTACATGGTAGGATACGGTCCCGATTTCCCTCAGAGGGTGCACCATAGGGGCGCATCCATTGAATCATCAAAGGAAAACAAGGGTTTTATCGGGTGCATCCAGGGTTATGATAGCTGGTATGGACGCGTTGAACCCAATCCAAATGTACTAACTGGGGCCCTCGTTGGTGGGCCCGATATGAATGACGAATTTAAAGATGAGAGATCAAATTACATCCAAACAGAGGCATGCACCTACAATACTGCAGCTTTAGTAGGGGTTTTTGCTAGATTGCATCAATCACATGGTGATGTTTATTTATCATCTCCTTTGATAGCTTCTAGCTAA 1548 0.4884 MKKEKVHIRYLAPCIWLLLSLTTIFLPLCESFNYGHALSQSLLYFESQRSGRLPYNQRVTWRHHSALTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTVTLLSWAAIEYGQQIAAAGEYAHTLEAIKWGTDYFIKAHTHPNVLWVEVGDGHTDHYCWQRPEDMTTSRRAYKVDAENPGSDVAGETAAALAAASMVFRRTKPHYSQLLLHHAEQLFEFGDKYKGKYDESVGVAKEYYASVSGYMDELLWAAIWLYRATQKDQYLNYFLENAHDFGGTTWAINEFSWDVKYAGVQAIASMLSMEEKKHKQHEVVLKQYRSKAEHYLCACLNLNNVSNVERTPGGLLYTRQWNNMQYVATASFLLTLYSDHLRATHQNLHCEKGEVGPDEMFAFAKSQVDYILGSNPMGMSYMVGYGPDFPQRVHHRGASIESSKENKGFIGCIQGYDSWYGRVEPNPNVLTGALVGGPDMNDEFKDERSNYIQTEACTYNTAALVGVFARLHQSHGDVYLSSPLIASS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01174 515 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 397 423 IPR018221 -
Vian7g01174 515 Pfam Glycosyl hydrolase family 9 34 494 IPR001701 GO:0004553|GO:0005975
Vian7g01174 515 SUPERFAMILY Six-hairpin glycosidases 31 504 IPR008928 GO:0005975
Vian7g01174 515 Gene3D - 30 502 IPR012341 GO:0005975
Vian7g01174 515 PANTHER ENDO-1,4-BETA-GLUCANASE 26 501 - -
Vian7g01174 515 FunFam Endoglucanase 30 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01174 Vian-Chr7 20064693 20067119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01174 14 497 Glycoside Hydrolase AT2G32990 72.874 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01174 - - gmx:100786912 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01174 7 20064693 20067119 Vian7g01174 7 20064693 20067119 ECH