Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01173 ATGGCTACTCTTGCATTTTCCTTCTTCTTCCTTCTCATCTCATTCTTTTCTTCATCATCAGAAGCGGGGTCCGTAGGAGTAAACTATGGAAGGTTGGCGAACGACCTTCCTACACCGGCGAAGGTGGTGGAGCTTCTAAAGAGTCAGGGGTTGAGCCGTGTGAAGCTGTACGACACCGACGCCACCGTGTTAACGGCGTTTGCTAACTCGGGAATCAAGGTGACGGTTGCCATGCCAAACGAGCTTCTCTCGAACGCCGCGGCGGATCAGTCCTTCACCGATGCATGGGTGAATGATAACATCTCCAAATACTACCCCGCCACGCAAATCGAAGCCGTCGCTGTGGGCAACGAAGTGTTTGTTGACCCCAATAACACGACCAAGTTTCTCGTAGAGGCAATGAAGAACGTGTTAGCTTCCTTAACCAAGTACAACCTCAACACCAACATCAAAATCTCCTCTCCCATCGCACTCTCCGCTCTCCAAAGCTCCTTCCCCGCATCATCCGGTTCCTTCAAAGCCGAACTGGTCGAACCGGTTATTAAACCCATGCTCGACCTCCTCCGCCAAACCGGTTCCCCTCTCATGGTGAACGCCTACCCCTTTTTCGCGTACTCAGCAAACGCTGATAAAATTTCCTTGGACTACGCGCTTTTCAAGGAGAACGCCGGCGTGGTTGATTCTGGTAACGGTTTAAAATACACCAACCTTTTCGACGCCCAAATCGACGCTGTTTTCGCTGCCATGTCAGCGCTTCAATACAACGACGTTAAGATCACAGTTTCCGAGACGGGTTGGCCTTCGGCGGGAGACTCGAATGAAATTGGAGCGGGTCCAGAGAATGCGGCTGCGTATAACGGGAACTTGGTTCGGCGCGTGTTGGGCCAGAACGGGACCCCCTTGAAGCCCAGTGAGTCCGTCGACGTTTTTCTCTTCGCGCTTTTCAACGAGAATCAGAAAACAGGGCCTACGTCCGAAAAAAATTACGGATTGTTTTACCCAAACGAGAAGAAGGTTTACGATATTCCACTGACGGCGGAGGGTGTAAAGAACGTGCCGTCGTCAGGCGTGGGGAAGAACCAGGTTCCGGCGAGTGGGGACGTATCGACGACGTCGCATCAGGGTCAGACCTGGTGCGTGGCGAATGGCGGTTCTTCCGAGAAGAAGCTTCAGAACGGTCTTAACTACGCTTGTGGAGAGGGTGGAGCTGATTGCACTCCCATTCAACCAAATGCCACGTGTTATAATCCTAACACGTTGGAAGCCCATGCTTCTTACGCTTTCAACAGTTACTATCAGAAGAAAGCACGTGCCGCTGGCACCTGCGATTTTGGTGGAACCGCCTATGTTGTCACACAGCCTCCTAAGTATGGGAGCTGCGAATTTCCCACTGGATACTGA 1401 0.5203 MATLAFSFFFLLISFFSSSSEAGSVGVNYGRLANDLPTPAKVVELLKSQGLSRVKLYDTDATVLTAFANSGIKVTVAMPNELLSNAAADQSFTDAWVNDNISKYYPATQIEAVAVGNEVFVDPNNTTKFLVEAMKNVLASLTKYNLNTNIKISSPIALSALQSSFPASSGSFKAELVEPVIKPMLDLLRQTGSPLMVNAYPFFAYSANADKISLDYALFKENAGVVDSGNGLKYTNLFDAQIDAVFAAMSALQYNDVKITVSETGWPSAGDSNEIGAGPENAAAYNGNLVRRVLGQNGTPLKPSESVDVFLFALFNENQKTGPTSEKNYGLFYPNEKKVYDIPLTAEGVKNVPSSGVGKNQVPASGDVSTTSHQGQTWCVANGGSSEKKLQNGLNYACGEGGADCTPIQPNATCYNPNTLEAHASYAFNSYYQKKARAAGTCDFGGTAYVVTQPPKYGSCEFPTGY 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01173 466 Gene3D Glycosidases 23 350 - -
Vian7g01173 466 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 13 450 IPR044965 GO:0004553|GO:0005975
Vian7g01173 466 SMART X8_cls 377 462 IPR012946 -
Vian7g01173 466 Pfam Glycosyl hydrolases family 17 25 342 IPR000490 GO:0004553|GO:0005975
Vian7g01173 466 Gene3D - 371 462 - -
Vian7g01173 466 FunFam Glucan endo-1,3-beta-glucosidase 3 24 347 - -
Vian7g01173 466 SUPERFAMILY (Trans)glycosidases 25 342 IPR017853 -
Vian7g01173 466 FunFam Glucan endo-1,3-beta-glucosidase 4 372 465 - -
Vian7g01173 466 Pfam X8 domain 377 448 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01173 Vian-Chr7 20054130 20055934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g01173 20 455 Glycoside Hydrolase AT5G55180 72.706 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01173 - - gmx:100803406 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01173 7 20054130 20055934 Vian7g01173 7 20054130 20055934 ECH