Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g01169 ATGTTTGTCCATAAGGTTTTGTCGCGCGTGTCCACCACCTTTTCCCGGACCTCTTTTCTCTCTGCTTCCAAAACTCCTCAACACTTCTCCAATCACTTACATTCCCTCATTCACCAATCTCCCAACAAGATAAGTTCATCATCAACTCCAAGATGTGGGTTTTCTTCATCAGCTTCAAGTGAAACTAATGACAAGGAAAAAGGGAAGAATATGGATATTGAAGATTCTACAAATGATAACCCTGATAAAGCAAACGAAAAGGCCAATAATTTTGAACAGGCCGGACAAGCTAAATCTGCAGATAAAACAGAGGAATCAAGTTCTATTTTGGATTCTCAATCTCAAACTGTAAAAGGAAGGAGGAGAGGTTTCAAACGAACAGCATTTTCTGGTTCTGATTCTGATTCAGATTCAGAGAATGAATATCTATCCAAGGATGATTTGATTAAACTTGTGGCTGAGAAAGAAGAACTTTTGAAGTTAAAGCACAAGGAGATTGAACAAATGCAGGATAAAGTTTTGCGTACATATGCAGATATGGAGAATATCATGGAAAGGACACGACGTGAATCAGAGAATTCGAAAAAGTTTGCTGTACAGAACTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGAAAGTTTTTCAAAAATTGATACACCTAGTGACTCTGCTGAAGCGGTAAAACTTCTGAAAACACTTCTGCAAGGTGTTGAAATGACCGAGAAACAATTATCAGAGGTACTTAAAAAGTTTGGCGTAGAAAAATTTGATCCTACGAATGAGCCCTTTGATCCACACAGACATAATGCCGTCTTTCAAATCCCTGATGGTTCTAAGCCTCCAGGAACCGTTGCAGCTGTTCTGAAGGCAGGATACATGCTTTATGATCGTGTCATTCGCCCAGCGGAAGTTGGTGTGACGCAAGCAGTGAAGGAAGATTAG 972 0.3981 MFVHKVLSRVSTTFSRTSFLSASKTPQHFSNHLHSLIHQSPNKISSSSTPRCGFSSSASSETNDKEKGKNMDIEDSTNDNPDKANEKANNFEQAGQAKSADKTEESSSILDSQSQTVKGRRRGFKRTAFSGSDSDSDSENEYLSKDDLIKLVAEKEELLKLKHKEIEQMQDKVLRTYADMENIMERTRRESENSKKFAVQNFAKSLLDVADNLGRASSVVKESFSKIDTPSDSAEAVKLLKTLLQGVEMTEKQLSEVLKKFGVEKFDPTNEPFDPHRHNAVFQIPDGSKPPGTVAAVLKAGYMLYDRVIRPAEVGVTQAVKED 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g01169 323 Gene3D - 145 261 IPR013805 -
Vian7g01169 323 CDD GrpE 167 316 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vian7g01169 323 ProSitePatterns grpE protein signature. 273 316 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vian7g01169 323 PRINTS GrpE protein signature 270 285 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vian7g01169 323 PRINTS GrpE protein signature 297 316 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vian7g01169 323 PRINTS GrpE protein signature 174 190 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vian7g01169 323 MobiDBLite consensus disorder prediction 62 86 - -
Vian7g01169 323 Hamap Protein GrpE [grpE]. 85 318 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vian7g01169 323 MobiDBLite consensus disorder prediction 87 117 - -
Vian7g01169 323 MobiDBLite consensus disorder prediction 40 141 - -
Vian7g01169 323 Coils Coil 152 172 - -
Vian7g01169 323 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 154 262 IPR013805 -
Vian7g01169 323 FunFam GrpE protein homolog 262 318 - -
Vian7g01169 323 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 263 318 IPR009012 GO:0006457
Vian7g01169 323 MobiDBLite consensus disorder prediction 40 61 - -
Vian7g01169 323 Pfam GrpE 152 317 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vian7g01169 323 FunFam GrpE protein homolog 146 261 - -
Vian7g01169 323 Gene3D Head domain of nucleotide exchange factor GrpE 262 317 IPR009012 GO:0006457
Vian7g01169 323 PANTHER GRPE PROTEIN 45 319 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g01169 Vian-Chr7 20001981 20011473 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g01169 K03687 - gmx:100803396 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01169 7 20001981 20011473 Vian7g01169 7 20001981 20011473 ECH